BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0104.0037.p         (163 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll6828 [NOU] COG1989 Type II secretory pathway, prepilin signal...    73   3e-13
XF2537 [NOU] COG1989 Type II secretory pathway, prepilin signal ...    64   2e-10
CC0184 Non COG                                                         63   3e-10

>mll6828 [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase
           PulO and related peptidases Mlo Mesorhizobium loti
          Length = 164

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 1/148 (0%)

Query: 16  ALCILCCAVALIDLRHGIIPNWLNLAIAALGLANVVVTEGTMAAFTAMGIAVLIGILFLL 75
           AL ++  A+++ D R  IIP+ LNLA+A +GL+  +  +   A    +  A        L
Sbjct: 14  ALAVVLGAISIADFRRQIIPDGLNLALAGIGLSYQLAADAD-AMPQRLLFAAATFAAAWL 72

Query: 76  LQRVYFALRQVDGLGLGDVKFLAAAAIWVGATGIPTLLLIAAIAALGVAGGLQLAGHEMK 135
           L+R +F +    GLGLGDVK LAAA+ W+    +P LL IA+ +AL   GG  +A     
Sbjct: 73  LRRGHFLMTGRIGLGLGDVKMLAAASCWISPLLLPVLLFIASASALLFVGGQVVATGPAA 132

Query: 136 RQTSIPFGPFLALGLLVTPALQSWLALN 163
            +  + FGPF+A+GL  + AL+ +  L+
Sbjct: 133 ARARVAFGPFIAIGLGASWALEQFAGLD 160


>XF2537 [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase
           PulO and related peptidases Xfa Xylella fastidiosa 9a5c
          Length = 287

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 6/139 (4%)

Query: 14  YGALCILCCAVAL--IDLRHGIIPNWLNLAIAALGLANVVVTEGTMAAFTAMGIAVLIGI 71
           +GA+   C  VAL  IDLR  ++P+ L L +  LGL  +  T+    A     +  ++G 
Sbjct: 130 FGAIVFSCFLVALAGIDLRTRLLPDQLTLMLMWLGL--IGSTDNLFMAAKPALLGAVVGY 187

Query: 72  LFLLLQRVYFAL-RQVDGLGLGDVKFLAAAAIWVGATGIPTLLLIAAIAALGVAGGLQLA 130
           L L +    F L    +G+G GD K LAA   W G  GI  ++LI+++A + V G + L 
Sbjct: 188 LSLWIVAALFKLIFNKEGMGHGDFKMLAALGAWCGLKGILPIILISSLAGV-VLGSVWLV 246

Query: 131 GHEMKRQTSIPFGPFLALG 149
                R T IPFGP+LA+G
Sbjct: 247 VRGHNRTTMIPFGPYLAVG 265


>CC0184 Non COG
          Length = 269

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 3/131 (2%)

Query: 24  VALIDLRHGIIPNWLNLAIAALGLANVVVTEGTMAAFTAM-GIAVLIGILFLLLQRVYFA 82
           +A ID  H  +P+ L L   ALG+   +   G +  +T + G AV  G L  L+  +Y  
Sbjct: 130 IATIDTEHLWLPDRLTLPFGALGVIATLAI-GEVPVWTPLVGAAVGFGGL-ALIAWLYKT 187

Query: 83  LRQVDGLGLGDVKFLAAAAIWVGATGIPTLLLIAAIAALGVAGGLQLAGHEMKRQTSIPF 142
           +R  DG+G GD + L A   WVG  G+P++L+ A +A L VA    L          +PF
Sbjct: 188 VRGFDGMGGGDPRLLGAIGAWVGWQGLPSVLVWACVAGLSVAIAQTLVRRRFSGDQQLPF 247

Query: 143 GPFLALGLLVT 153
           G FLA+G  +T
Sbjct: 248 GAFLAIGAWLT 258