BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0104.0032.p         (277 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF1523 [U] COG3156 Type II secretory pathway, component PulK Xfa...    65   2e-10

>XF1523 [U] COG3156 Type II secretory pathway, component PulK Xfa Xylella
           fastidiosa 9a5c
          Length = 281

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 14/192 (7%)

Query: 14  RGFVIVAVLWILLALSSLAIIFSAYLAASARALAASDL--SLQTEALVSAGLELTAYQLT 71
           RG  ++ VLW+++ L+++   F+  L+A    L  + L  S Q + +  AGLE    +L 
Sbjct: 5   RGAALIVVLWLVMLLAAMIGAFA--LSARVEHLQGAVLVSSAQAQEVARAGLEYAVSRLQ 62

Query: 72  LTDE---KTRPQYGAFQFGLDDASVGVTFTSEAGRLDLNYASKEMLIGLFVVLGAQKDAA 128
            +D    +  P    + +   DA++ +    E+G++DLN A  ++L  L   LG     A
Sbjct: 63  DSDSVQVRWIPDGRPYSWHYADATLEMRMIDESGKVDLNVADLQLLTVLIQALGVDVARA 122

Query: 129 SEYADRIAGWRTRP---APGSENVEAARYNALG--YSPRQGLFTHVNELALVAGIPEAFV 183
           +  A  I  WR      +PG    E + Y A G  Y  +   F  + EL LV G+     
Sbjct: 123 ARLAGAIIDWRDTDHLVSPG--GAEDSDYAAAGLPYGAKDNPFQSIAELRLVLGMDRDLY 180

Query: 184 DRVLPFVTVFNG 195
            R+LP +T+++G
Sbjct: 181 RRMLPNITIYSG 192