BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0104.0015.p         (75 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc03990 [J] COG0254 Ribosomal protein L31 Sme Sinorhizobium mel...   129   2e-30
AGl2181 [J] COG0254 Ribosomal protein L31 Atu Agrobacterium tume...   128   3e-30
msr3935 [J] COG0254 Ribosomal protein L31 Mlo Mesorhizobium loti      126   1e-29
BMEI0322 [J] COG0254 Ribosomal protein L31 Bme Brucella melitensis    125   3e-29
CC3275 [J] COG0254 Ribosomal protein L31 Ccr Caulobacter vibrioides   115   3e-26

>SMc03990 [J] COG0254 Ribosomal protein L31 Sme Sinorhizobium meliloti
          Length = 73

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 65/71 (91%)

Query: 1  MKADIHPNYHTIKVVMTDGTEYLTRSTWGKEGDTLNLDIDPKSHPAWTGGTQQLMDRGGR 60
          MKADIHP+YHTIKVVMTDGTEY TRSTWG EG T+NL+IDPKSHPAWTGG QQL+DRGGR
Sbjct: 1  MKADIHPDYHTIKVVMTDGTEYETRSTWGTEGATMNLEIDPKSHPAWTGGNQQLVDRGGR 60

Query: 61 VSRFQKKFSGF 71
          VS+F+K+F G 
Sbjct: 61 VSKFKKRFEGL 71


>AGl2181 [J] COG0254 Ribosomal protein L31 Atu Agrobacterium tumefaciens
          strain C58 (Cereon)
          Length = 73

 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 62/71 (87%)

Query: 1  MKADIHPNYHTIKVVMTDGTEYLTRSTWGKEGDTLNLDIDPKSHPAWTGGTQQLMDRGGR 60
          MKADIHP YHTIKVVMTDGTEY TRSTWG EG  +NL+IDPKSHPAWTGG QQLMDRGGR
Sbjct: 1  MKADIHPAYHTIKVVMTDGTEYETRSTWGSEGAVMNLEIDPKSHPAWTGGNQQLMDRGGR 60

Query: 61 VSRFQKKFSGF 71
          VS+F K+F G 
Sbjct: 61 VSKFNKRFGGL 71


>msr3935 [J] COG0254 Ribosomal protein L31 Mlo Mesorhizobium loti
          Length = 73

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 65/71 (91%)

Query: 1  MKADIHPNYHTIKVVMTDGTEYLTRSTWGKEGDTLNLDIDPKSHPAWTGGTQQLMDRGGR 60
          MK+ IHP+YHTIKVVMTDGTEY TRSTWGKEGDT+NLDIDP +HPAWTGG Q L+DRGGR
Sbjct: 1  MKSAIHPDYHTIKVVMTDGTEYTTRSTWGKEGDTMNLDIDPTTHPAWTGGQQTLLDRGGR 60

Query: 61 VSRFQKKFSGF 71
          +S+F+K+F GF
Sbjct: 61 LSKFKKRFEGF 71


>BMEI0322 [J] COG0254 Ribosomal protein L31 Bme Brucella melitensis
          Length = 73

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 54/71 (76%), Positives = 65/71 (91%)

Query: 1  MKADIHPNYHTIKVVMTDGTEYLTRSTWGKEGDTLNLDIDPKSHPAWTGGTQQLMDRGGR 60
          MKA+IHP+YHTIKVVMTDGTEY+TRSTWGKEGDT+NLDIDP +HPAWTGG+Q L+DRGGR
Sbjct: 1  MKANIHPDYHTIKVVMTDGTEYMTRSTWGKEGDTMNLDIDPTTHPAWTGGSQTLLDRGGR 60

Query: 61 VSRFQKKFSGF 71
          V++F+ +F   
Sbjct: 61 VTKFKNRFGNL 71


>CC3275 [J] COG0254 Ribosomal protein L31 Ccr Caulobacter vibrioides
          Length = 76

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 59/74 (79%)

Query: 1  MKADIHPNYHTIKVVMTDGTEYLTRSTWGKEGDTLNLDIDPKSHPAWTGGTQQLMDRGGR 60
          MK DIHP+YH I V +TDG+ Y TRST+GKEG  L LDIDP++HPAWTGG  QLMDRGGR
Sbjct: 1  MKQDIHPDYHFITVTLTDGSSYKTRSTYGKEGANLALDIDPRTHPAWTGGNAQLMDRGGR 60

Query: 61 VSRFQKKFSGFLKK 74
          VSRF  KF+GF  K
Sbjct: 61 VSRFNAKFAGFTGK 74