BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0103.0003.p         (177 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc02300 [L] COG1961 Site-specific recombinases, DNA invertase P...    63   3e-10
SMa0785 [L] COG1961 Site-specific recombinases, DNA invertase Pi...    63   3e-10
mll6222 [L] COG1961 Site-specific recombinases, DNA invertase Pi...    59   6e-09

>SMc02300 [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs
           Sme Sinorhizobium meliloti
          Length = 694

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 3/140 (2%)

Query: 6   CEHADKLRQLELTLEQARYEATRAPRRYEAVDSDNRLVAGELERRWNERLVAVRELEGKR 65
            E A  LR  +L  ++ARYEA  A RRY  VD DNRLVA  LE  WN +L  +  L+ + 
Sbjct: 414 VEQAASLRDKQL--QRARYEAELARRRYLKVDPDNRLVADALEADWNGKLRDLDTLQREH 471

Query: 66  DTLLATPEMTLSDIDRDRLLALDSELKRAWESPGATAATRNRIIRSFINEIVVRMRDEVL 125
           +    T +  L    ++R+ AL ++    W +   +   R R++   I ++ + + DE +
Sbjct: 472 ERRNETDQSLLDGAMQERIRALAADFPGIWNNERTSPVERKRMLGLLIEDVTL-LVDEQI 530

Query: 126 DLIVHWHGGDHTALQVRRNR 145
           ++ + W GG   +L V R R
Sbjct: 531 NMHIRWRGGRTQSLAVARPR 550


>SMa0785 [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs
           Sme Sinorhizobium meliloti
          Length = 694

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 3/140 (2%)

Query: 6   CEHADKLRQLELTLEQARYEATRAPRRYEAVDSDNRLVAGELERRWNERLVAVRELEGKR 65
            E A  LR  +L  ++ARYEA  A RRY  VD DNRLVA  LE  WN +L  +  L+ + 
Sbjct: 414 VEQAASLRDKQL--QRARYEAELARRRYLKVDPDNRLVADALEADWNGKLRDLDTLQREH 471

Query: 66  DTLLATPEMTLSDIDRDRLLALDSELKRAWESPGATAATRNRIIRSFINEIVVRMRDEVL 125
           +    T +  L    ++R+ AL ++    W +   +   R R++   I ++ + + DE +
Sbjct: 472 ERRNETDQSLLDGAMQERIRALAADFPGIWNNERTSPVERKRMLGLLIEDVTL-LVDEQI 530

Query: 126 DLIVHWHGGDHTALQVRRNR 145
           ++ + W GG   +L V R R
Sbjct: 531 NMHIRWRGGRTQSLAVARPR 550


>mll6222 [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs
           Mlo Mesorhizobium loti
          Length = 701

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 4/134 (2%)

Query: 13  RQLELTLEQARYEATRAPRRYEAVDSDNRLVAGELERRWNERLVAVRELEGKRDTLLATP 72
           +Q  L  E+ARY+A RA R+Y+ V+ +NRLVA  LE+ W ++L  V E+E +        
Sbjct: 423 KQWALRRERARYDAERARRQYDTVEPENRLVARTLEKAWEDKLRLVDEIEQEYRRWRDRE 482

Query: 73  EMTLSDIDRDRLLALDSELKRAWESPGATAATRNRIIRSFINEIVV---RMRDEVLDLIV 129
            + L   D   L  L   L   W S       R RI+R  + E+V+   ++R +V   I+
Sbjct: 483 PLVLQAQDHAALQELAENLPAIWHSETTQPEDRKRILRFIVQEVVLDQKKIRGQVAIRIL 542

Query: 130 HWHGGDHTALQVRR 143
            W  G  +  Q++R
Sbjct: 543 -WQTGATSEHQIQR 555