BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0101.0007.p         (200 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb20465 [KG] COG1940 Transcriptional regulator/sugar kinase Sme...   243   2e-64

>SMb20465 [KG] COG1940 Transcriptional regulator/sugar kinase Sme
           Sinorhizobium meliloti
          Length = 356

 Score =  243 bits (620), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 145/190 (76%), Gaps = 1/190 (0%)

Query: 6   HPDDAGLIGALYRAPSWIFEAHDSILAVDIGRTNIRCGVVETRRKKAPNLSEACVWQFEL 65
           HPDDAGLIGA +  P+W+ + H +ILA+DIG TNIR G+VE   K   +LS+A VW+ ++
Sbjct: 164 HPDDAGLIGAAHLMPAWMLKGHKAILAIDIGGTNIRVGIVELHLKDETDLSKAKVWKSDI 223

Query: 66  WRHADDEPSRENAVRRLVKMLKELIAKAEDEGFKLAPFIGIACPGVIKSDGSIEKGAQNL 125
           WRHADD+P+R   +  L+ M+++LI KA+      AP IG+ACPGVI  DGSI +G QNL
Sbjct: 224 WRHADDKPNRSTTIEGLIGMIEKLIEKADKADLAPAPVIGVACPGVINEDGSILRGGQNL 283

Query: 126 P-GNWESSKFNLPASLVQAIPQIGENDTAVIMHNDEVVQGLSKVPFMQDVKRWGVLTIGT 184
           P GNWES  FNLPA+L  AIPQIG+++T VIMHND VVQGLS++PF+Q+   WG+LTIGT
Sbjct: 284 PGGNWESEHFNLPAALKDAIPQIGDHETFVIMHNDAVVQGLSQIPFVQNASSWGILTIGT 343

Query: 185 GLGNARFTNR 194
           GLGNA F+N+
Sbjct: 344 GLGNAHFSNK 353