BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0101.0004.p         (169 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC3563 Non COG                                                         84   1e-16
PA2134 [S] COG3652 Predicted outer membrane protein Pae Pseudomo...    84   1e-16

>CC3563 Non COG
          Length = 231

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 24  FVKQVAISDMFEIESNKLAQQKG-NAAEKTFASQMVTDHTKTSTELKGLVTSGKVKAELP 82
           F  ++A   MFEIE+ KLA  +  N + K FA  M     KTS  L   + +  V   LP
Sbjct: 83  FAAKLADGAMFEIEAAKLATSRSTNPSVKKFAIAMDAAQKKTSRSLNTAIITSGVTINLP 142

Query: 83  SALDSSHQSKLDKLKGANGNDFSSEFNSMQVSAHKDAVDLFERYAKGGDNADLKNWAGKT 142
           + L    Q  LD L   +  DF  ++  + +  H+  ++L +RYA+ GD   LK +A +T
Sbjct: 143 TMLSQDLQDALDDLAKTDPKDFDKQYADVMIDTHQSTLNLLQRYAQDGDTPALKTFAAET 202

Query: 143 LPALKHHLEMAQDLDK 158
            P ++ HL MA+ L K
Sbjct: 203 APTIQEHLNMAEGLKK 218


>PA2134 [S] COG3652 Predicted outer membrane protein Pae Pseudomonas
           aeruginosa
          Length = 190

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 85/142 (59%), Gaps = 6/142 (4%)

Query: 18  SPSTVDFVKQVAISDMFEIESNKLAQQKGNAAE-KTFASQMVTDHTKTSTELKGLVTSGK 76
           +P T  FV + + + + EIE+ K+A +K  AA+ K FA QM+ DH K + EL+ L    K
Sbjct: 49  APQT--FVSEASAAGVAEIEAGKMALEKSTAADVKVFAKQMIDDHGKVNAELRSLAERKK 106

Query: 77  VKAELPSALDSSHQSKLDKLKGANGNDFSSEFNSMQVSAHKDAVDLFERYAKGGDNADLK 136
           ++ E  ++L    ++ L  L+ A+   F   + + QV+AH+ AV+LF + A    + +L+
Sbjct: 107 LEVEDDASLTDKAKATLLDLRDAS---FDPAYANNQVAAHEKAVELFTQAADNLTDPELQ 163

Query: 137 NWAGKTLPALKHHLEMAQDLDK 158
            +A   LPALKHHLEMA+ L K
Sbjct: 164 AFAKTHLPALKHHLEMARALAK 185