BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0011.p         (60 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa2412 [K] COG2207 AraC-type DNA-binding domain-containing prot...    59   2e-09

>SMa2412 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme
           Sinorhizobium meliloti
          Length = 314

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 1   VLGQRLARAHHLLNDPRHSGSTIGTIAFEVGFGDLSYFNRTFRRHYGVTPSDIR 54
           VLG+RL+ A  L+       ++I  IA+ VGF DLSYFNRTFR  YGV PSD+R
Sbjct: 256 VLGRRLSLAKSLIL-AEGEATSISQIAYNVGFNDLSYFNRTFRSRYGVRPSDLR 308