BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0099.0003.p         (178 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc00711 [E] COG0287 Prephenate dehydrogenase Sme Sinorhizobium ...   216   2e-56
mll3535 [E] COG0287 Prephenate dehydrogenase Mlo Mesorhizobium loti   202   4e-52
AGl2429 [E] COG0287 Prephenate dehydrogenase Atu Agrobacterium t...   196   3e-50
BMEI0079 [E] COG0287 Prephenate dehydrogenase Bme Brucella melit...   194   1e-49
CC2224 Non COG                                                        152   3e-37

>SMc00711 [E] COG0287 Prephenate dehydrogenase Sme Sinorhizobium meliloti
          Length = 307

 Score =  216 bits (550), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/169 (63%), Positives = 123/169 (72%)

Query: 4   APLFKRIALVGFGLIGGSIARGARAQGLVGEIVTTARSEKTRARVAELGIVDRVVETNIE 63
           A  F+ IAL+G GLIG SIAR  R + L G IV T RSE T  R  ELG+ DR   +  E
Sbjct: 2   AQQFQTIALIGIGLIGSSIARDIREKQLAGTIVVTTRSEATLKRAGELGLGDRYTLSAAE 61

Query: 64  AVKDADLVILCIPVGACGLVAAEIAGHLKPGAIISDVGSVKGAVVKDMAPHLPDGVHFVP 123
           AV+ ADLV++ +PVGA G VAAEIA HLKPGAI++DVGS KG+V+  MAPHLP  VHFVP
Sbjct: 62  AVEGADLVVVSVPVGASGAVAAEIAAHLKPGAIVTDVGSTKGSVIAQMAPHLPKDVHFVP 121

Query: 124 AHPVAGTEHSGPDSGFAELFINRWCILTPPEGTDPAATDRLRTFWAALG 172
            HP+AGTEHSGPD+GFA LF  RWCILTPP GTD  A  RLR FW  LG
Sbjct: 122 GHPIAGTEHSGPDAGFAGLFRGRWCILTPPAGTDEEAVARLRLFWETLG 170


>mll3535 [E] COG0287 Prephenate dehydrogenase Mlo Mesorhizobium loti
          Length = 311

 Score =  202 bits (513), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/170 (57%), Positives = 121/170 (71%)

Query: 3   TAPLFKRIALVGFGLIGGSIARGARAQGLVGEIVTTARSEKTRARVAELGIVDRVVETNI 62
           T+P+F++IALVG GLIG S+AR  R +GL G +  + RS  T  R  ELG+ D       
Sbjct: 2   TSPMFEKIALVGIGLIGSSLARVIRREGLAGHVAISTRSATTLKRAEELGLGDSYTTDAK 61

Query: 63  EAVKDADLVILCIPVGACGLVAAEIAGHLKPGAIISDVGSVKGAVVKDMAPHLPDGVHFV 122
           EAV+DADLVI+ +PVG+ G VA EIA  LK GAI++DVGS K +V+  M PH+PDGVHF+
Sbjct: 62  EAVRDADLVIVSVPVGSSGAVAEEIAPALKKGAILTDVGSTKASVIAQMQPHVPDGVHFI 121

Query: 123 PAHPVAGTEHSGPDSGFAELFINRWCILTPPEGTDPAATDRLRTFWAALG 172
           P HP+AGTE SGPD+GFA+LF NRWCI TP  GTDP A +RL  FW   G
Sbjct: 122 PGHPLAGTEKSGPDAGFADLFDNRWCIFTPLPGTDPEALERLSEFWRRCG 171


>AGl2429 [E] COG0287 Prephenate dehydrogenase Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 310

 Score =  196 bits (497), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/167 (57%), Positives = 118/167 (70%)

Query: 6   LFKRIALVGFGLIGGSIARGARAQGLVGEIVTTARSEKTRARVAELGIVDRVVETNIEAV 65
           +F+RIAL+G GLIG SIAR  R  GL   +V + RSE T  R  EL +      +  EAV
Sbjct: 6   MFERIALIGIGLIGSSIARDVRELGLARHVVISTRSEDTLKRAEELALGTDYTVSAAEAV 65

Query: 66  KDADLVILCIPVGACGLVAAEIAGHLKPGAIISDVGSVKGAVVKDMAPHLPDGVHFVPAH 125
           KDADLVI+ +PVGA   VA +IA +LKP AI++DVGS K +V+  MAPH+P+ VHF+P H
Sbjct: 66  KDADLVIVSVPVGASESVAQQIAPYLKPSAIVTDVGSTKASVIAQMAPHMPENVHFIPGH 125

Query: 126 PVAGTEHSGPDSGFAELFINRWCILTPPEGTDPAATDRLRTFWAALG 172
           P+AGTE SGPD+GFA LF  RWCI TP  GTD AA +RL+ FW ALG
Sbjct: 126 PLAGTEKSGPDAGFAGLFRERWCIFTPLPGTDAAALERLKDFWRALG 172


>BMEI0079 [E] COG0287 Prephenate dehydrogenase Bme Brucella melitensis
          Length = 321

 Score =  194 bits (492), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/166 (55%), Positives = 116/166 (69%)

Query: 7   FKRIALVGFGLIGGSIARGARAQGLVGEIVTTARSEKTRARVAELGIVDRVVETNIEAVK 66
           F +I L+G GLIG S+AR  R +GL   I    RS +T  R  EL + D     + EAVK
Sbjct: 6   FDKITLIGIGLIGSSLARVIRREGLATHIAIATRSAETLKRAEELNLGDSYTTNSAEAVK 65

Query: 67  DADLVILCIPVGACGLVAAEIAGHLKPGAIISDVGSVKGAVVKDMAPHLPDGVHFVPAHP 126
           DADLVI+ +PVG+ G VA +IAG+LKPGAI++DVGS K +V+  M P LP+ +HF+P HP
Sbjct: 66  DADLVIVSVPVGSSGTVARQIAGNLKPGAIVTDVGSTKASVIAQMQPELPENMHFIPGHP 125

Query: 127 VAGTEHSGPDSGFAELFINRWCILTPPEGTDPAATDRLRTFWAALG 172
           +AGTE+SGPD+GFAELF NRWCILTP   TD  A ++L  FW A G
Sbjct: 126 LAGTEYSGPDAGFAELFTNRWCILTPLPDTDEKALEKLTAFWTACG 171


>CC2224 Non COG
          Length = 312

 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 105/170 (61%), Gaps = 3/170 (1%)

Query: 6   LFKRIALVGFGLIGGSIARGARAQGLVGEIVTTARSEKTRARVAELGIVDRVVETNIEAV 65
           L+ ++ ++G GLIGGS+ R AR  G+VGEI     SE  RARV ELGI + V     EAV
Sbjct: 7   LYPKLTVIGCGLIGGSVIRAARQHGVVGEITVADASEAHRARVTELGIAEHVTGDIAEAV 66

Query: 66  KDADLVILCIPVGACGLVAAEIAGHLKPGAIISDVGSVKGAVVKDMAPHLPDGVHFVPAH 125
           KDADLV++  PV +   +A  +   +KPGA ++DVGS KG V +         +  +P H
Sbjct: 67  KDADLVVIATPVLSVPELARVVIPAMKPGATLTDVGSTKGNVAEAFRAQDLSKIFAIPGH 126

Query: 126 PVAGTEHSGPDSGFAELFINRWCILTPPEGTDP---AATDRLRTFWAALG 172
           P+AGTE SGPD+GFAELF NRW ILTP E  D    AA  +L  FW A G
Sbjct: 127 PIAGTEQSGPDAGFAELFENRWTILTPFESEDDHYAAAVAKLSAFWRAFG 176