BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0031.p         (406 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA1492 [Q] COG1233 Phytoene dehydrogenase and related proteins M...   130   8e-30
MJ1488 [Q] COG1233 Phytoene dehydrogenase and related proteins M...    80   7e-15

>MA1492 [Q] COG1233 Phytoene dehydrogenase and related proteins Mac
           Methanosarcina acetivorans str.C2A
          Length = 425

 Score =  130 bits (326), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 182/417 (43%), Gaps = 50/417 (11%)

Query: 6   IDAVVIGAGAGGLCAAARLAHGGLHTLVVDDKDRLGGRASTEEIDGFKVNIGAIAI---- 61
           + ++VIGAG GGL +AARLA  G    V +     GGR +  +  GF+++ GA  +    
Sbjct: 1   MKSIVIGAGLGGLLSAARLAKAGHEVEVFERLPLTGGRFTNLDYKGFQLSSGAFHMLPNG 60

Query: 62  ----------EFGG---VFEETFHTVGAPLDIRAPEPASSF----FIDGKVIXNLPDGRQ 104
                     E G    +      T+  PL     + A  F    F D   + +  D  +
Sbjct: 61  PGGPLARLIEEIGADVHIVRSEMTTIRVPLKKGKTDYAKGFKDISFNDFPSLLSYKDRMK 120

Query: 105 ----------------STEDWLKGYTSNATVHALFRNLCAAIFACNAAELPARAFLTYFT 148
                           + + W+K   ++  +     + C    +  + E+P         
Sbjct: 121 IALLIVSTRKNRPAGTTLQAWIKAQVNDEWLVKFADSFCGWALSLKSDEVPVEEIFEIIE 180

Query: 149 SKGAFKKFGFCPQGTIGVWNSLGNAVRRNG-DIWLGTPATTIHTANGKVEGVTVLRNGER 207
           +   F   G    G  G+ ++L   ++ +G  I  G   + I   NGKV GV V  N E 
Sbjct: 181 NMYRFGGPGIPIGGCKGIIDALEAVIQASGGKIHTGQEVSKILVENGKVAGV-VAENKEH 239

Query: 208 VRIDTDLVISNAGPKATVALAG---GEAFPADYIAKVKNDLRPAANIVINVASREPLINH 264
              + D+VISN G  AT  L      E   +DY+ K+   L+P+A I I +A+ EPLI H
Sbjct: 240 ---NADIVISNLGHTATALLCREVLSEKMHSDYL-KMLQTLKPSAGIKICLAADEPLIGH 295

Query: 265 PGIVTFGKTRRLCNMANLSATCPELAPSGWHLYVAYAVPVPALGDFDSNAEVALALEDLR 324
            G++    TRR+  +  ++   P+LAP G HL + +    P     +  AE+ + L+DL+
Sbjct: 296 SGVLLTPYTRRINGINEVTQADPKLAPPGKHLTMCHQYVAPE-NIKNLEAEIQMGLDDLK 354

Query: 325 EQFANFDQARILSIRVMRDDWPAQRSCAGYDLPRETGIEGLWCVGDAVKQYGNGGTQ 381
           E F    +  +L I+   D WP  R+ +G D   ET   GL+ VGD  K  G GG +
Sbjct: 355 EVFPG-KKYEVLLIQSYHDGWPVNRAASGTDPGNETPFIGLYVVGDGAK--GKGGIE 408


>MJ1488 [Q] COG1233 Phytoene dehydrogenase and related proteins Mja
           Methanococcus jannaschii
          Length = 393

 Score = 80.5 bits (197), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 156/385 (40%), Gaps = 63/385 (16%)

Query: 30  HTLVVDDK-DRLGGRASTEEIDGFKVNIGAI-AIEFG--GVFEETFHTVGAPLDIRAPEP 85
           H +VV +K   LGGR +  + +GF++  GA+  I  G  G   +     GA + I   +P
Sbjct: 23  HEVVVFEKLPFLGGRFTNLKYEGFQLTTGALHMIPHGNDGYLAQALRKAGANVKIINSKP 82

Query: 86  ASSFFIDGKV-----IXNLPDGRQ-------STEDWLKGYTSNATVHALFRNLCAAI--- 130
             +F I+GK      + +L   ++       +T+  L     N +       +  A+   
Sbjct: 83  DGTFLINGKEYLYKELFSLLGFKEKAKAFKLATKLKLGKVDKNISFGEFLEEIDLALKVG 142

Query: 131 -------FACNAAELPARAFLTYFTSKGAFKKFGFCPQGTIGVWNSLGNAVRRNGDIWLG 183
                   +  A E P    +    +   F   G    G   V + L   +++N      
Sbjct: 143 NAFTGWALSLTAYETPMSEIIEIAKNYHKFGGPGIPIGGCKAVTDELSRIIKKN------ 196

Query: 184 TPATTIHTANGKV---EGVTVLRNGERVRIDT---DLVISNAGPKATVALAGGEAFPADY 237
                    NGK+     V  +   E+  ID    D+VISN  P  T  +          
Sbjct: 197 ---------NGKIIKEYEVKRIEIDEKAYIDDYEFDVVISNISPIETQKICN-------- 239

Query: 238 IAKVKNDLRPAANIVINVASREPLINHPGIVTFGKTRRLCNMANLSATCPELAPSGWHLY 297
           I  +K+  +P+  I I++A++E +I H G++   +  R+  +  ++     LAP GWHL 
Sbjct: 240 IKFLKSKPKPSKGIKISIATKEGIIKHGGVLFTPECERINGLNQVTNVDKSLAPEGWHLV 299

Query: 298 VAYAVPVPALGDFDSNAEVALALEDLREQFANFDQARILSIRVMRDDWPAQRSCAGYDLP 357
           + +   +      +   E+ L LED+   F   D  +IL I+  RDDWP   +  G D+ 
Sbjct: 300 MTHQTQLTN----NVKKEIDLGLEDIENLFKGKD-YKILHIQSYRDDWPVNHASNGTDID 354

Query: 358 RETGIEGLWCVGDAVKQYGNGGTQA 382
                +  + VGD  K  G GG + 
Sbjct: 355 NIVN-DRFYLVGDGAK--GRGGIEV 376