BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0098.0013.p (319 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc01461 [L] COG0210 Superfamily I DNA and RNA helicases Sme Sin... 386 e-107 AGc3725 [L] COG0210 Superfamily I DNA and RNA helicases Atu Agro... 373 e-103 BMEI0596 [L] COG0210 Superfamily I DNA and RNA helicases Bme Bru... 371 e-102 mlr1503 [L] COG0210 Superfamily I DNA and RNA helicases Mlo Meso... 356 3e-98 CC1528 [L] COG0210 Superfamily I DNA and RNA helicases Ccr Caulo... 352 7e-97 >SMc01461 [L] COG0210 Superfamily I DNA and RNA helicases Sme Sinorhizobium meliloti Length = 857 Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/277 (68%), Positives = 226/277 (81%), Gaps = 7/277 (2%) Query: 16 QPAA--GGIAARARA-RAAAGGPQYLNGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTT 72 +PAA GGIAARA A R A P Y++GLNPEQREAVE L+GPVLVLAGAGTGKTRVLTT Sbjct: 19 KPAAADGGIAARAMAARDKAQRPDYVSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTT 78 Query: 73 RIAHILSQGRARPHEILSVTFTNKAAREMKLRLGQMLGQAVEGMPWLGTFHSIGGRILRI 132 RIAHILS GRA P +IL+VTFTNKAAREMK R+G ++G AVEGMPWLGTFHSIG ++LR Sbjct: 79 RIAHILSTGRAYPSQILAVTFTNKAAREMKERIGVLVGHAVEGMPWLGTFHSIGVKLLRR 138 Query: 133 HAELVQLKSNFTVLDVDDQVRLLKQLLQAENIDDKRWPARMLAGLIDGWKNRGLSPSQVP 192 HAELV L+S+FT+LD DD VRL+KQL+QAE +DDKRWPA+ AG+ID WKN+GL PSQ+P Sbjct: 139 HAELVGLRSDFTILDTDDVVRLIKQLIQAEGLDDKRWPAKQFAGMIDTWKNKGLDPSQIP 198 Query: 193 AGEAASFGNGKGGKIYATYQERLKILNAADFGDLLLENIRLFRENPDVLRQYQSRFKFIL 252 G+A +F NGKG ++YA YQ RL LNA DFGDLLL IR+FR NPDVL++Y ++F++IL Sbjct: 199 EGDARAFANGKGRELYAAYQNRLLTLNACDFGDLLLHPIRMFRANPDVLKEYHAKFRYIL 258 Query: 253 VDEYQDTNVAQYLWLRLLSQ----APSRPGQPLSAVI 285 VDEYQDTN AQY+WLRLL+Q + +RP L A Sbjct: 259 VDEYQDTNTAQYMWLRLLAQQTQASRNRPSSGLPATF 295 >AGc3725 [L] COG0210 Superfamily I DNA and RNA helicases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 827 Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/290 (63%), Positives = 222/290 (76%), Gaps = 2/290 (0%) Query: 10 HGVPEHQPAAGGIAARARARAAAGGP--QYLNGLNPEQREAVETLDGPVLVLAGAGTGKT 67 + P GIAARA A P YL+GLNPEQREAVETLDGPVLVLAGAGTGKT Sbjct: 26 NNAPSENGGGLGIAARAMAARDQVRPAHDYLSGLNPEQREAVETLDGPVLVLAGAGTGKT 85 Query: 68 RVLTTRIAHILSQGRARPHEILSVTFTNKAAREMKLRLGQMLGQAVEGMPWLGTFHSIGG 127 RVLTTRIAHIL+ GRA P +IL+VTFTNKAAREMK R+G ++G AVEGMPWLGTFHSIG Sbjct: 86 RVLTTRIAHILATGRAYPSQILAVTFTNKAAREMKERIGVLVGGAVEGMPWLGTFHSIGV 145 Query: 128 RILRIHAELVQLKSNFTVLDVDDQVRLLKQLLQAENIDDKRWPARMLAGLIDGWKNRGLS 187 ++LR HAEL+ LKS+FT+LD DD VRL+KQL+QAE +DDKRWPA+ AG+IDGWKN+GL+ Sbjct: 146 KLLRRHAELIGLKSDFTILDTDDVVRLIKQLIQAEGLDDKRWPAKQFAGMIDGWKNKGLT 205 Query: 188 PSQVPAGEAASFGNGKGGKIYATYQERLKILNAADFGDLLLENIRLFRENPDVLRQYQSR 247 P +P G++ +F NGKG ++YA YQ RLK LNA DFGDLLL I +FR + D+L++Y + Sbjct: 206 PPDIPEGDSRAFANGKGRELYAAYQARLKTLNACDFGDLLLHPISIFRRHTDILKEYHQK 265 Query: 248 FKFILVDEYQDTNVAQYLWLRLLSQAPSRPGQPLSAVIPGELTSPRLRGA 297 F++ILVDEYQDTN AQY+WLRLL+Q Q + V + + RGA Sbjct: 266 FRYILVDEYQDTNTAQYMWLRLLAQRAKDEPQNVCCVGDDDQSIYGWRGA 315 >BMEI0596 [L] COG0210 Superfamily I DNA and RNA helicases Bme Brucella melitensis Length = 827 Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust. Identities = 174/252 (69%), Positives = 209/252 (82%), Gaps = 1/252 (0%) Query: 33 GGPQYLNGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARPHEILSVT 92 G P YL GLNP+Q++AV T +GPVLVLAGAGTGKTRVLTTRIAHILS G A P +IL+VT Sbjct: 9 GEPDYLKGLNPKQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQILAVT 68 Query: 93 FTNKAAREMKLRLGQMLGQAVEGMPWLGTFHSIGGRILRIHAELVQLKSNFTVLDVDDQV 152 FTNKAAREMK R+G ++G AVEGMPWLGTFHSIG ++LR HAELV L S+FT+LD DD + Sbjct: 69 FTNKAAREMKERIGHLVGGAVEGMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVI 128 Query: 153 RLLKQLLQAENIDDKRWPARMLAGLIDGWKNRGLSPSQVPAGEAASFGNGKGGKIYATYQ 212 RL+KQL+QAE +DDKRWPAR A +IDGWKN+G SP+ +P G+A SFGNG+G ++Y YQ Sbjct: 129 RLIKQLIQAEGLDDKRWPARTFANMIDGWKNKGFSPADIPEGDARSFGNGRGRELYQAYQ 188 Query: 213 ERLKILNAADFGDLLLENIRLFRENPDVLRQYQSRFKFILVDEYQDTNVAQYLWLRLLSQ 272 ERL+ LNA DFGDLLL IR+FR +PD+LR+Y ++F++ILVDEYQDTN AQYLWLRLL+Q Sbjct: 189 ERLRTLNACDFGDLLLHPIRIFRNHPDILREYHAKFRYILVDEYQDTNTAQYLWLRLLAQ 248 Query: 273 AP-SRPGQPLSA 283 P SR P A Sbjct: 249 RPKSRTTAPTQA 260 >mlr1503 [L] COG0210 Superfamily I DNA and RNA helicases Mlo Mesorhizobium loti Length = 817 Score = 356 bits (914), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 171/248 (68%), Positives = 202/248 (81%), Gaps = 5/248 (2%) Query: 30 AAAGG----PQYLNGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARP 85 AA GG P YL GLNPEQR AVET +GPVLVLAGAGTGKTRVLTTRIAHIL+ G+A P Sbjct: 2 AARGGQNSPPDYLKGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGKAFP 61 Query: 86 HEILSVTFTNKAAREMKLRLGQMLGQA-VEGMPWLGTFHSIGGRILRIHAELVQLKSNFT 144 +IL+VTFTNKAAREMK R+G ++G+ VEGMPWLGTFHSIG ++LR HAEL L+S+FT Sbjct: 62 SQILAVTFTNKAAREMKQRIGILIGEGNVEGMPWLGTFHSIGVKLLRRHAELAGLRSDFT 121 Query: 145 VLDVDDQVRLLKQLLQAENIDDKRWPARMLAGLIDGWKNRGLSPSQVPAGEAASFGNGKG 204 +LD DD VRL+KQL+QAE +DDKRWPA+ A +IDGWKN+G P+ + G+A SF NGKG Sbjct: 122 ILDTDDVVRLIKQLIQAEGLDDKRWPAKQFAQMIDGWKNKGQGPADIAEGDARSFANGKG 181 Query: 205 GKIYATYQERLKILNAADFGDLLLENIRLFRENPDVLRQYQSRFKFILVDEYQDTNVAQY 264 ++Y YQERL+ LNA DFGDLL IR+FR NPDVL+ Y RFK+ILVDEYQDTN AQY Sbjct: 182 RELYKAYQERLQTLNACDFGDLLCHPIRIFRANPDVLKDYHRRFKYILVDEYQDTNTAQY 241 Query: 265 LWLRLLSQ 272 +WLRLL+Q Sbjct: 242 MWLRLLAQ 249 >CC1528 [L] COG0210 Superfamily I DNA and RNA helicases Ccr Caulobacter vibrioides Length = 805 Score = 352 bits (903), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 164/236 (69%), Positives = 197/236 (83%) Query: 37 YLNGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARPHEILSVTFTNK 96 YL+GLNPEQREAVET +GP+LVLAGAGTGKTRVLTTR+AHIL+ GRARP EIL+VTFTNK Sbjct: 39 YLDGLNPEQREAVETTEGPLLVLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFTNK 98 Query: 97 AAREMKLRLGQMLGQAVEGMPWLGTFHSIGGRILRIHAELVQLKSNFTVLDVDDQVRLLK 156 AAREM+ R+ ++G EG+ WLGTFHS+ +ILR HAEL+ LKSN+T++D DD RLLK Sbjct: 99 AAREMRERITHIIGPEAEGLRWLGTFHSVAAQILRRHAELIGLKSNYTIIDTDDNERLLK 158 Query: 157 QLLQAENIDDKRWPARMLAGLIDGWKNRGLSPSQVPAGEAASFGNGKGGKIYATYQERLK 216 QL++AENID KRW R+L+ +IDGWKNRG +P +VP EA F NGKG +Y YQERL+ Sbjct: 159 QLIEAENIDAKRWTPRILSQIIDGWKNRGWTPDRVPTSEAGEFANGKGISLYRQYQERLR 218 Query: 217 ILNAADFGDLLLENIRLFRENPDVLRQYQSRFKFILVDEYQDTNVAQYLWLRLLSQ 272 ILNA DFGDLLL NI LF +PDVL ++Q RFK+++VDEYQDTNVAQYLWLRLL+Q Sbjct: 219 ILNACDFGDLLLHNISLFTGHPDVLDEFQQRFKYVMVDEYQDTNVAQYLWLRLLAQ 274