BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0098.0005.p (330 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02101 [J] COG0052 Ribosomal protein S2 Sme Sinorhizobium meli... 387 e-107 mll0651 [J] COG0052 Ribosomal protein S2 Mlo Mesorhizobium loti 382 e-106 BMEI0823 [J] COG0052 Ribosomal protein S2 Bme Brucella melitensis 377 e-104 CC1923 [J] COG0052 Ribosomal protein S2 Ccr Caulobacter vibrioides 350 3e-96 AGc2539 [J] COG0052 Ribosomal protein S2 Atu Agrobacterium tumef... 331 2e-90 >SMc02101 [J] COG0052 Ribosomal protein S2 Sme Sinorhizobium meliloti Length = 255 Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/254 (71%), Positives = 217/254 (85%), Gaps = 2/254 (0%) Query: 1 MSLPEFNMRQLLEAGVHFGHQAHRWNPKMQDYIFGARNNIHIIDLAQTVPMLHRALQAVS 60 M+LP+F MRQLLEAGVHFGHQ HRWNPKM+ YIFG RNN+HIIDLAQTVPML RALQ VS Sbjct: 1 MALPDFTMRQLLEAGVHFGHQTHRWNPKMKPYIFGDRNNVHIIDLAQTVPMLSRALQVVS 60 Query: 61 DTVAKGGRILFVGTKRSAQDGVADAAKRSAQYFVNSRWLGGTLTNWKTISASIKRLRHLD 120 DTVA GGR+LFVGTKR A + +ADAAKRSAQY+VN+RWLGG +TNWKTIS SI+RLR LD Sbjct: 61 DTVASGGRVLFVGTKRQASEIIADAAKRSAQYYVNARWLGGMMTNWKTISNSIQRLRKLD 120 Query: 121 DVLSSGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQR 180 ++L+S EA+ +TKKERL L+RER+KL+R+LGGI+DMGG PD++F+IDTNKE IAI EA+R Sbjct: 121 EILAS-EASGFTKKERLNLEREREKLNRALGGIRDMGGTPDLMFIIDTNKESIAIDEAKR 179 Query: 181 LNIPVAAIVDTNSDPKGITYVVPGNDDAGRAISLYCDLVARAAIDGISRAQGESGIDIGA 240 L IPV A++D+N DP I Y +PGNDDA RAI+LYCDL+ARAAIDGI+R QG SG D+GA Sbjct: 180 LGIPVVAVIDSNCDPDQIDYAIPGNDDASRAIALYCDLIARAAIDGIARQQGASGRDLGA 239 Query: 241 S-ATPVQEDLPAAA 253 S PV+ L A+ Sbjct: 240 SEEVPVEPALEEAS 253 >mll0651 [J] COG0052 Ribosomal protein S2 Mlo Mesorhizobium loti Length = 260 Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust. Identities = 183/255 (71%), Positives = 213/255 (83%), Gaps = 1/255 (0%) Query: 1 MSLPEFNMRQLLEAGVHFGHQAHRWNPKMQDYIFGARNNIHIIDLAQTVPMLHRALQAVS 60 M+LP+F+MRQLLEAG+HFGHQ HRWNPKM YI+GARNNIHIIDL+QTVP+LH+AL+ VS Sbjct: 1 MALPDFSMRQLLEAGIHFGHQTHRWNPKMAPYIYGARNNIHIIDLSQTVPLLHQALKQVS 60 Query: 61 DTVAKGGRILFVGTKRSAQDGVADAAKRSAQYFVNSRWLGGTLTNWKTISASIKRLRHLD 120 DTVAKGGR+LFVGTKR A D VADAA+RSAQY+VNSRWLGG LTNWKTIS SI+RLR LD Sbjct: 61 DTVAKGGRVLFVGTKRQASDIVADAAQRSAQYYVNSRWLGGMLTNWKTISNSIQRLRKLD 120 Query: 121 DVLSSGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQR 180 ++L +GEA TKKERL L RER+KLD++LGGIKDMG PD++FVIDTNKE IAI EA+R Sbjct: 121 EML-AGEAQGLTKKERLNLDREREKLDKALGGIKDMGSTPDLMFVIDTNKEAIAILEAKR 179 Query: 181 LNIPVAAIVDTNSDPKGITYVVPGNDDAGRAISLYCDLVARAAIDGISRAQGESGIDIGA 240 L IPV AI+D+N DP I + +PGNDDA RAI LYCDL+A+AAIDGI+R QG G+DIGA Sbjct: 180 LGIPVVAIIDSNCDPDKIDFPIPGNDDAARAIQLYCDLIAKAAIDGIARQQGALGVDIGA 239 Query: 241 SATPVQEDLPAAAPS 255 S E APS Sbjct: 240 SVEAPVEPALDPAPS 254 >BMEI0823 [J] COG0052 Ribosomal protein S2 Bme Brucella melitensis Length = 266 Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust. Identities = 175/254 (68%), Positives = 215/254 (84%), Gaps = 2/254 (0%) Query: 1 MSLPEFNMRQLLEAGVHFGHQAHRWNPKMQDYIFGARNNIHIIDLAQTVPMLHRALQAVS 60 M+LP+F+MRQLLEAGVHFGHQ HRWNPKM +I+G RNNIHI+DL+QTVP+L+ AL+ VS Sbjct: 11 MALPDFSMRQLLEAGVHFGHQTHRWNPKMAPFIYGERNNIHILDLSQTVPLLNSALKVVS 70 Query: 61 DTVAKGGRILFVGTKRSAQDGVADAAKRSAQYFVNSRWLGGTLTNWKTISASIKRLRHLD 120 DTVA+GGR+L+VGTKR A D +ADA RSAQY+VN+RWLGG +TNWKTIS SI+RLR LD Sbjct: 71 DTVARGGRVLYVGTKRQASDIIADAGNRSAQYYVNARWLGGMMTNWKTISNSIQRLRKLD 130 Query: 121 DVLSSGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQR 180 ++L +GEA +TKKERL L+RER+KLDR+LGGIKDMG +PD++F+IDTNKE IAIQEA+R Sbjct: 131 ELL-AGEAQGFTKKERLNLEREREKLDRALGGIKDMGSVPDLMFIIDTNKEAIAIQEAKR 189 Query: 181 LNIPVAAIVDTNSDPKGITYVVPGNDDAGRAISLYCDLVARAAIDGISRAQGESGIDIGA 240 L IPV A++D+N DP I Y +PGNDDA RAI+LYCDL+ARAA+DGI+R QG GID+GA Sbjct: 190 LGIPVVAVIDSNCDPDQIDYPIPGNDDAARAIALYCDLIARAALDGIARQQGAMGIDVGA 249 Query: 241 SA-TPVQEDLPAAA 253 PV+ L A A Sbjct: 250 QVEAPVEPALQAPA 263 >CC1923 [J] COG0052 Ribosomal protein S2 Ccr Caulobacter vibrioides Length = 268 Score = 350 bits (898), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/249 (67%), Positives = 202/249 (81%), Gaps = 1/249 (0%) Query: 1 MSLPEFNMRQLLEAGVHFGHQAHRWNPKMQDYIFGARNNIHIIDLAQTVPMLHRALQAVS 60 M+LPEF+MRQLLEAG HFGHQ HRWNPKM YIFG+R+NIHIIDL+Q++P+LH+AL V Sbjct: 1 MALPEFSMRQLLEAGAHFGHQTHRWNPKMDRYIFGSRSNIHIIDLSQSIPLLHQALVKVR 60 Query: 61 DTVAKGGRILFVGTKRSAQDGVADAAKRSAQYFVNSRWLGGTLTNWKTISASIKRLRHLD 120 + A GGR+LFVGTKR A D VA AAKR AQY+VN RWLGGTLTNW+T+S SI RLR L+ Sbjct: 61 EVAAAGGRVLFVGTKRQASDPVATAAKRCAQYYVNHRWLGGTLTNWRTVSGSIARLRELE 120 Query: 121 DVLSSGEANSYTKKERLTLQRERDKLDRSLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQR 180 VL +GE +KKE L L RERDKL+ SLGGIKDMGG+PD++FVIDTNKE IAI EA++ Sbjct: 121 GVL-AGEGQGRSKKELLQLTRERDKLELSLGGIKDMGGIPDIMFVIDTNKEAIAILEARK 179 Query: 181 LNIPVAAIVDTNSDPKGITYVVPGNDDAGRAISLYCDLVARAAIDGISRAQGESGIDIGA 240 LNIPV AI+DTN DP GITY +PGNDDA RA+ LYCDL+A A +DG++ Q +G+D+GA Sbjct: 180 LNIPVVAILDTNCDPDGITYPIPGNDDAARALQLYCDLIADAVLDGLAAGQAAAGVDLGA 239 Query: 241 SATPVQEDL 249 S PV+ L Sbjct: 240 SVAPVEPAL 248 >AGc2539 [J] COG0052 Ribosomal protein S2 Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 227 Score = 331 bits (848), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 158/222 (71%), Positives = 192/222 (86%), Gaps = 2/222 (0%) Query: 29 MQDYIFGARNNIHIIDLAQTVPMLHRALQAVSDTVAKGGRILFVGTKRSAQDGVADAAKR 88 M+ YIFG RNNIHIIDLAQTVPML RALQ VSDTVA+GGR+LFVGTKR A + +AD+AKR Sbjct: 1 MKPYIFGDRNNIHIIDLAQTVPMLSRALQVVSDTVARGGRVLFVGTKRQASEIIADSAKR 60 Query: 89 SAQYFVNSRWLGGTLTNWKTISASIKRLRHLDDVLSSGEANSYTKKERLTLQRERDKLDR 148 SAQY+VNSRWLGG +TNWKTIS SI+RLR +D++L+S E + Y+KKERLTL+RER+KL++ Sbjct: 61 SAQYYVNSRWLGGMMTNWKTISNSIQRLRKVDEILNS-EGSGYSKKERLTLEREREKLEK 119 Query: 149 SLGGIKDMGGLPDMIFVIDTNKEDIAIQEAQRLNIPVAAIVDTNSDPKGITYVVPGNDDA 208 +LGGI+DMGG+PD++F+IDTNKE IAI+EA+RL IPV AI+D+N DP I Y +PGNDDA Sbjct: 120 ALGGIRDMGGVPDLMFIIDTNKEKIAIEEAKRLGIPVVAIIDSNCDPDHIDYPIPGNDDA 179 Query: 209 GRAISLYCDLVARAAIDGISRAQGESGIDIGAS-ATPVQEDL 249 RAISLYCDL+ARAAIDGI+R QG SG DIGAS P++ L Sbjct: 180 SRAISLYCDLIARAAIDGIARQQGASGRDIGASEEAPIEPAL 221