BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0004.p         (239 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc02100 [J] COG0264 Translation elongation factor Ts Sme Sinorh...   202   4e-52
AGc2541 [J] COG0264 Translation elongation factor Ts Atu Agrobac...   202   5e-52
BMEI0824 [J] COG0264 Translation elongation factor Ts Bme Brucel...   191   1e-48
mll0650 [J] COG0264 Translation elongation factor Ts Mlo Mesorhi...   185   6e-47
RP087 [J] COG0264 Translation elongation factor Ts Rpr Rickettsi...   174   1e-43

>SMc02100 [J] COG0264 Translation elongation factor Ts Sme Sinorhizobium
           meliloti
          Length = 307

 Score =  202 bits (515), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/164 (64%), Positives = 123/164 (75%), Gaps = 2/164 (1%)

Query: 1   MVKELRESTGAGMMDCKAALTENNGDMQEAQDWLRKKGLSKAAKKAGRVAAEGLIGALTS 60
           MVKELRE TGAGMMDCK AL E NGDM+ A DWLR KG++KA KK+GR AAEGLIG  +S
Sbjct: 7   MVKELREKTGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGIASS 66

Query: 61  GTKGVLVEVNSETDFVARNEQFQGLVKMIAQVALHNGADVEKIKAAKVGDV--TVETAIS 118
           GTK V+VE+NSETDFVARN+ FQ LV+ +A VAL     V  +  A       +VE  I 
Sbjct: 67  GTKAVVVEINSETDFVARNDAFQELVRGVANVALGTDGSVAAVSKATYPATGKSVEDTIK 126

Query: 119 DAIATIGENMTLRRAASLEVSKGVVSSYVHNAVVEGAGKIGVIV 162
           DAIATIGENMTLRR+A LEV  GVV++YVHNA  EG GK+GV+V
Sbjct: 127 DAIATIGENMTLRRSALLEVEDGVVATYVHNAAGEGIGKLGVLV 170


>AGc2541 [J] COG0264 Translation elongation factor Ts Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 379

 Score =  202 bits (514), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 135/192 (70%), Gaps = 2/192 (1%)

Query: 1   MVKELRESTGAGMMDCKAALTENNGDMQEAQDWLRKKGLSKAAKKAGRVAAEGLIGALTS 60
           MVKELRE +GAGMMDCK AL E NGDM+ A DWLR KG++KA KK+GR AAEGLIG  T 
Sbjct: 79  MVKELREKSGAGMMDCKKALAETNGDMEAAIDWLRAKGIAKADKKSGRTAAEGLIGVATM 138

Query: 61  GTKGVLVEVNSETDFVARNEQFQGLVKMIAQVALHNGADVEKIKAAKVGDV--TVETAIS 118
           G K V+VE+NSETDFVARN+ FQ L++ IAQVAL     V+ + AA       +V  +I 
Sbjct: 139 GHKAVVVELNSETDFVARNDAFQDLIRGIAQVALTTDGTVDAVSAATYPATGKSVADSIK 198

Query: 119 DAIATIGENMTLRRAASLEVSKGVVSSYVHNAVVEGAGKIGVIVESAPQDRKRLAPNIAK 178
           DAIATIGENMTLRR+A+LEV  GVV++YVHNA  +G GK+GV+V    +  K +  +I +
Sbjct: 199 DAIATIGENMTLRRSAALEVPHGVVATYVHNAAGDGIGKLGVLVALKSEGDKAVLNSIGR 258

Query: 179 PSEPAMKAKKPI 190
                + A  P+
Sbjct: 259 QVAMHIAATNPL 270


>BMEI0824 [J] COG0264 Translation elongation factor Ts Bme Brucella
           melitensis
          Length = 310

 Score =  191 bits (484), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/162 (59%), Positives = 119/162 (73%)

Query: 1   MVKELRESTGAGMMDCKAALTENNGDMQEAQDWLRKKGLSKAAKKAGRVAAEGLIGALTS 60
           +VKELR+ TGAGMMDCKAAL    G ++ A DWLR KG++KA KKAGR AAEGL+G   S
Sbjct: 12  LVKELRDLTGAGMMDCKAALAATEGKIEAAVDWLRAKGIAKADKKAGRTAAEGLVGVAAS 71

Query: 61  GTKGVLVEVNSETDFVARNEQFQGLVKMIAQVALHNGADVEKIKAAKVGDVTVETAISDA 120
           G K V+VEVNSETDFVARN+ FQ LV+ IAQ AL      E +  A V   TV  A  DA
Sbjct: 72  GNKAVVVEVNSETDFVARNDAFQELVRKIAQAALSTDGSSEAVANANVDGKTVTEAAKDA 131

Query: 121 IATIGENMTLRRAASLEVSKGVVSSYVHNAVVEGAGKIGVIV 162
           +ATIGEN++ RR+A+L V +GVV++Y+HN V +G GK+GV+V
Sbjct: 132 VATIGENISFRRSAALSVPQGVVATYIHNGVADGLGKLGVLV 173


>mll0650 [J] COG0264 Translation elongation factor Ts Mlo Mesorhizobium loti
          Length = 306

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 99/163 (60%), Positives = 118/163 (72%), Gaps = 3/163 (1%)

Query: 2   VKELRESTGAGMMDCKAALTENNGDMQEAQDWLRKKGLSKAAKKAGRVAAEGLIGALTSG 61
           VKELR+ TGAGMMDCKAAL E NG+M+EA DWLRKKG+SKA KKAGR AAEGLIG     
Sbjct: 8   VKELRDLTGAGMMDCKAALNETNGNMEEAVDWLRKKGISKADKKAGRTAAEGLIGVDAGV 67

Query: 62  TKGVLVEVNSETDFVARNEQFQGLVKMIAQVALHNGADVEKIKAAKV--GDVTVETAISD 119
            +  +VEVNSETDFVARN  FQ +V  +A+VAL  G   E + AAK    D +V   I D
Sbjct: 68  REAAVVEVNSETDFVARNAAFQEIVANVAKVALAYGT-TEAVAAAKYPGSDKSVTDTIKD 126

Query: 120 AIATIGENMTLRRAASLEVSKGVVSSYVHNAVVEGAGKIGVIV 162
           A+ TIGEN+  RR+A L V  G V++YVHNAV +G GK+GV+V
Sbjct: 127 AVGTIGENLGFRRSAKLTVPHGAVATYVHNAVADGLGKLGVLV 169


>RP087 [J] COG0264 Translation elongation factor Ts Rpr Rickettsia
           prowazekii
          Length = 309

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/175 (54%), Positives = 119/175 (68%), Gaps = 4/175 (2%)

Query: 1   MVKELRESTGAGMMDCKAALTENNGDMQEAQDWLRKKGLSKAAKKAGRVAAEGLIGALTS 60
           +VKELRE TGAGMMDCK AL E +G+ +EA D+LRKKGL+ A KK+GR+A+EGL      
Sbjct: 10  VVKELREKTGAGMMDCKKALIETSGNFEEAIDFLRKKGLAAAVKKSGRIASEGLTAVKVD 69

Query: 61  GTKGVLVEVNSETDFVARNEQFQGLVKMIAQVA-LHNGADVEKIKAAKVGDVTVETAISD 119
           G    ++EVNSETDFVARN+QFQ LVK I  +A +    D  KI   + G  +VE  I D
Sbjct: 70  GLISAVIEVNSETDFVARNKQFQDLVKDIVNLAIIAQNIDTLKISKMQSGK-SVEEEIID 128

Query: 120 AIATIGENMTLRRAASLEVSKGVVSSYVHNAVVEGAGKIGVIV--ESAPQDRKRL 172
            IA IGEN+TLRR   LE+S G + SYVHN VV   GKI V+V  ES  +D+ +L
Sbjct: 129 NIAIIGENLTLRRMDILEISNGAIGSYVHNEVVPHLGKISVLVGLESNAKDKVKL 183