BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0098.0003.p (243 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0683 [O] COG0785 Cytochrome c biogenesis protein Bme Brucel... 254 9e-68 SMc00248 [O] COG0785 Cytochrome c biogenesis protein Sme Sinorhi... 252 6e-67 mll0838 [O] COG0785 Cytochrome c biogenesis protein Mlo Mesorhiz... 241 7e-64 AGc3305 [O] COG0785 Cytochrome c biogenesis protein Atu Agrobact... 229 5e-60 BH1194 [O] COG0785 Cytochrome c biogenesis protein Bha Bacillus ... 153 3e-37 >BMEII0683 [O] COG0785 Cytochrome c biogenesis protein Bme Brucella melitensis Length = 253 Score = 254 bits (650), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 133/246 (54%), Positives = 170/246 (69%), Gaps = 5/246 (2%) Query: 3 DVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIEQVNQDGATAASK----RAVMTAA 58 D+S A AG +SFLSPCVLPLVPPYL Y+ G ++E D + A +K R++ AA Sbjct: 8 DISYMTAAGAGALSFLSPCVLPLVPPYLCYMAGVSVEDFRADASKATAKPSARRSLGFAA 67 Query: 59 LMFVLGFSTVFVALGASASFVGGLVRAWSAELSILAGIVIIIMGLHFLGVTRIGLLMREG 118 L FVLGF+TVFVALGA AS +G +R W +++I+AG+VII+MGL+FLG+ R+ L RE Sbjct: 68 LCFVLGFTTVFVALGAGASSIGAFLRTWQQQIAIVAGVVIILMGLNFLGLLRLSFLSREA 127 Query: 119 RLTAPK-PVGLWGAYVMGLAFAFGWTPCIGPILAAILSIAAAEATVTKGAGLLAVYSAGL 177 R A P GAY+MGLAFAFGWTPCIGP+L IL++A +TV +GA LLA YS GL Sbjct: 128 RFQARNAPASPLGAYIMGLAFAFGWTPCIGPVLGPILTLAGGSSTVGEGALLLATYSLGL 187 Query: 178 GIPFLLAAFMVKQFSSLFARMKRHLDTVERVMGVLMVVTGIGFLTGAVSSVSVWLLETFP 237 GIPFL+AA F +R + HL VE+ MGVL+++ G+ FLTG + S S WLLE FP Sbjct: 188 GIPFLIAALFSGAFMRFLSRFRVHLGKVEKAMGVLLIIAGVVFLTGGMQSFSFWLLENFP 247 Query: 238 ALQNIG 243 AL +G Sbjct: 248 ALGRLG 253 >SMc00248 [O] COG0785 Cytochrome c biogenesis protein Sme Sinorhizobium meliloti Length = 247 Score = 252 bits (643), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 143/244 (58%), Positives = 176/244 (72%), Gaps = 4/244 (1%) Query: 3 DVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIEQVNQDG---ATAASKRAVMTAAL 59 D+SI A++AG +SFLSPCVLPLVPPYL Y+ G +++Q +DG ATA+++RAV+ AAL Sbjct: 5 DISIWTAVLAGALSFLSPCVLPLVPPYLCYMAGVSVDQF-RDGNAVATASTRRAVLPAAL 63 Query: 60 MFVLGFSTVFVALGASASFVGGLVRAWSAELSILAGIVIIIMGLHFLGVTRIGLLMREGR 119 F LGF+TVFVALGA AS +G L+R LS + GI+IIIMGLHFLGV RIGLL RE R Sbjct: 64 FFTLGFATVFVALGAGASSIGLLLRQHLDLLSRIGGIIIIIMGLHFLGVFRIGLLAREAR 123 Query: 120 LTAPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILSIAAAEATVTKGAGLLAVYSAGLGI 179 KP L GAYVMGLAFAFGWTPCIGP+L IL +AAA TV GA LLA+YS GL + Sbjct: 124 FQGGKPATLSGAYVMGLAFAFGWTPCIGPVLGTILGVAAARDTVADGAALLAIYSLGLAV 183 Query: 180 PFLLAAFMVKQFSSLFARMKRHLDTVERVMGVLMVVTGIGFLTGAVSSVSVWLLETFPAL 239 PF +AA F +R +RHL +E++MG L+V G+ FL G VSSV++W +TFP L Sbjct: 184 PFWIAAGFSSAFMRFLSRFRRHLGLIEKLMGALLVAAGLAFLFGFVSSVAIWFQQTFPIL 243 Query: 240 QNIG 243 IG Sbjct: 244 SQIG 247 >mll0838 [O] COG0785 Cytochrome c biogenesis protein Mlo Mesorhizobium loti Length = 248 Score = 241 bits (616), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 130/245 (53%), Positives = 169/245 (68%), Gaps = 4/245 (1%) Query: 3 DVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIEQVNQD-GATA--ASKRAVMTAAL 59 D+ +A+ AG +SFLSPCVLPLVPPYL Y+ G +++ D G TA ++ A++ +++ Sbjct: 4 DIGYVSAVGAGAISFLSPCVLPLVPPYLCYMAGVSVDDFRGDAGVTAREGTRGALLYSSI 63 Query: 60 MFVLGFSTVFVALGASASFVGGLVRAWSAELSILAGIVIIIMGLHFLGVTRIGLLMREGR 119 FVLGFSTVFVALGA AS +G L+R W L++ AG++II+MGL+FLG+ RI LL RE R Sbjct: 64 AFVLGFSTVFVALGAGASTIGRLLRVWQEPLAMGAGVLIILMGLNFLGILRIPLLSREAR 123 Query: 120 LTAP-KPVGLWGAYVMGLAFAFGWTPCIGPILAAILSIAAAEATVTKGAGLLAVYSAGLG 178 + KP AY+MGLAFAFGWTPCIGP+L IL++A TV +GA LLA YS GLG Sbjct: 124 FQSQGKPANAIAAYIMGLAFAFGWTPCIGPVLGPILTLAGGRETVGEGALLLAAYSLGLG 183 Query: 179 IPFLLAAFMVKQFSSLFARMKRHLDTVERVMGVLMVVTGIGFLTGAVSSVSVWLLETFPA 238 IPFL+AA F + + HL VE+ +G L+VV G+ FLTG V +VS WLLE FP Sbjct: 184 IPFLIAAVFSGAFMRFLGKFRVHLGRVEKAIGALLVVAGVFFLTGGVQTVSYWLLENFPV 243 Query: 239 LQNIG 243 L +G Sbjct: 244 LGRLG 248 >AGc3305 [O] COG0785 Cytochrome c biogenesis protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 267 Score = 229 bits (584), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 133/244 (54%), Positives = 172/244 (70%), Gaps = 3/244 (1%) Query: 3 DVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIEQ--VNQDGATAASKRAVMTAALM 60 D+S+ +AL+AG +SFLSPCVLPLVPPYL Y+ G ++EQ + +RAV+ +A Sbjct: 24 DISLFSALLAGALSFLSPCVLPLVPPYLCYMAGVSVEQFRTEETAPRPEVRRAVLFSAFC 83 Query: 61 FVLGFSTVFVALGASASFVGGLVRAWSAELSILAGIVIIIMGLHFLGVTRIGLLMREGRL 120 F LGF+TVFVALGA AS +G L+R L+ + G +II+MGL+FLGV RIGL RE R Sbjct: 84 FTLGFATVFVALGAGASTIGTLLRQNLDILAKIGGFIIILMGLNFLGVFRIGLFSREARF 143 Query: 121 T-APKPVGLWGAYVMGLAFAFGWTPCIGPILAAILSIAAAEATVTKGAGLLAVYSAGLGI 179 A KP L GAYVMGLAFAFGWTPCIGP+L AIL +AA+ TV GA LLAVYS GL + Sbjct: 144 QGAGKPATLSGAYVMGLAFAFGWTPCIGPVLGAILGVAASRDTVGDGAMLLAVYSLGLAV 203 Query: 180 PFLLAAFMVKQFSSLFARMKRHLDTVERVMGVLMVVTGIGFLTGAVSSVSVWLLETFPAL 239 PF +AA F R +RHL VE+++GVL+V+TG+ F++G +++V++W ETFP L Sbjct: 204 PFWIAAAFSGSFMRFLVRFRRHLGLVEKLLGVLLVLTGLAFMSGFITNVAIWFQETFPIL 263 Query: 240 QNIG 243 IG Sbjct: 264 MQIG 267 >BH1194 [O] COG0785 Cytochrome c biogenesis protein Bha Bacillus halodurans Length = 238 Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 135/239 (56%), Gaps = 6/239 (2%) Query: 1 MHDVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIEQVNQDGATAASKRAVMTAALM 60 M +V+I A AG+VSFLSPCV PLVP YL LTG I A ++ ++ +L Sbjct: 1 MVEVTIWLAFFAGVVSFLSPCVFPLVPVYLAQLTGTQIS----GNEITADRKLILMRSLG 56 Query: 61 FVLGFSTVFVALGASASFVGGLVRAWSAELSILAGIVIIIMGLHFLGVTRIGLLMREGRL 120 F+LGF+++F+ LGAS++F+G L + GI+I + GL +GV I +L+ E RL Sbjct: 57 FILGFTSIFIFLGASSTFIGQLFWGNRQLFEQIGGIIITVFGLQMMGVISIRMLLSEKRL 116 Query: 121 TAP--KPVGLWGAYVMGLAFAFGWTPCIGPILAAILSIAAAEATVTKGAGLLAVYSAGLG 178 A + + ++G FA GWTPCIG +L AIL +A T+ G +L VYS GL Sbjct: 117 QAKPRQSASFANSVLIGFLFATGWTPCIGLVLGAILVLAGDANTMWSGMSMLFVYSMGLA 176 Query: 179 IPFLLAAFMVKQFSSLFARMKRHLDTVERVMGVLMVVTGIGFLTGAVSSVSVWLLETFP 237 IPF L A + + ++ + L T+++ GV+MV G+ TG S+++ +L P Sbjct: 177 IPFFLVALLWSRSLHKVRKLNKWLPTIQKGSGVVMVALGVLLFTGQFSTIAAYLARINP 235