BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0098.0002.p (274 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll7194 [K] COG2186 Transcriptional regulators Mlo Mesorhizobium... 167 2e-41 YPO0010 [K] COG2186 Transcriptional regulators Ype Yersinia pestis 136 5e-32 CC0783 Non COG 131 2e-30 mll1686 [K] COG2186 Transcriptional regulators Mlo Mesorhizobium... 128 1e-29 STM3888 [K] COG2186 Transcriptional regulators Sty Salmonella ty... 125 8e-29 >mll7194 [K] COG2186 Transcriptional regulators Mlo Mesorhizobium loti Length = 263 Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 97/223 (43%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 37 SVHSQVTDRVGSSIVRGEIGVGETLPPEIRICEMMDVSRTVVREAIRTLTGKGLIESRPK 96 ++H+ V +++G IV+G+ GE LP EM+ VSRTV+REAI+ L GKGL+ESRPK Sbjct: 25 ALHATVVEQIGLRIVQGDFLPGEALPNADDSSEMLGVSRTVLREAIKVLAGKGLVESRPK 84 Query: 97 SGTRVRPPEQWNQLDPDVLRWHLESAEIDRYLAKLFQLRAAVEPAAAALAATHAEEVDVA 156 +GTRVRP WN LDPDVL W + LF+LR A+EP +AALAA A +A Sbjct: 85 TGTRVRPRSDWNFLDPDVLSWRYAGGVSADDVRALFELRRAIEPMSAALAAQRATPAQIA 144 Query: 157 RIRAGCDGMDAAKTN-EEFVAADIAFHQAIYFATRNEFFWPIAQMFEITLRQSFTIAAPG 215 I A M+A + + F D+ FHQ I T NE +A + E L SF ++ Sbjct: 145 EIHAALAEMEAVSDDGDRFAKPDLVFHQTILRMTGNELIGSLAALVETALVMSFRLSNDN 204 Query: 216 SHRPR-ALREHRAVLDAIAAGDAETARAATVVLLTNSADDLVR 257 R +L HR V + IAAGDA A+ A +VL+ N+ DD+ R Sbjct: 205 PEGQRHSLPLHREVAEKIAAGDAAGAQKALLVLIDNAEDDVRR 247 >YPO0010 [K] COG2186 Transcriptional regulators Ype Yersinia pestis Length = 229 Score = 136 bits (343), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 117/219 (53%), Gaps = 5/219 (2%) Query: 33 ALRRSVHSQVTDRVGSSIVRGEIGVGETLPPEIRICEMMDVSRTVVREAIRTLTGKGLIE 92 A +R++ + +++G I+ GE G LP EI + E VSRT VREA++ L KG++ Sbjct: 9 AAQRNLSYLLAEKIGQRILAGEYEAGSILPGEIELGEQFGVSRTAVREAVKMLAAKGMLL 68 Query: 93 SRPKSGTRVRPPEQWNQLDPDVLRWHLESAEIDRYLAKLFQLRAAVEPAAAALAATHAEE 152 RP+ GTRV P WN LD ++L W + D+ + LR ++EP A LAATHA E Sbjct: 69 PRPRIGTRVMPQTNWNYLDQELLTWWMTKENFDQVMQHFLILRTSLEPQACYLAATHANE 128 Query: 153 VDVARIRAGCDGMDAAKTN---EEFVAADIAFHQAIYFATRNEFFWPIAQMFEITLRQSF 209 + + M A +N E+++ D FH+ IY A+ N F A +F ++ S+ Sbjct: 129 KQRELLASLVAEMRALHSNFNREQWIQVDTQFHKLIYEASGNPFLISFANLFS-SVYYSY 187 Query: 210 TIAAPGSHRPRALREHRAVLDAIAAGDAETARAATVVLL 248 A G + L+ H+ ++D I AGD + A A VLL Sbjct: 188 FRAITGDEVIK-LQHHQNIVDTILAGDNQGALFACQVLL 225 >CC0783 Non COG Length = 242 Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 4/211 (1%) Query: 37 SVHSQVTDRVGSSIVRGEIGVGETLPPEIRICEMMDVSRTVVREAIRTLTGKGLIESRPK 96 S+ + +++G +IV GE G P E + + SRTV REA++ LT KGL+ +RP+ Sbjct: 8 SLTYGLVEQLGQAIVTGEYAKG-GFPTEGELSKQFGASRTVTREAVKMLTAKGLLSARPR 66 Query: 97 SGTRVRPPEQWNQLDPDVLRWHLESAEIDRYLAKLFQLRAAVEPAAAALAATHAEEVDVA 156 GT V P +WN LDPDVLRW LE R LA ++R +EP AAALAA HA+E + Sbjct: 67 HGTVVEPEAEWNMLDPDVLRWLLERKFSLRLLADFTEMRMGIEPTAAALAARHADEAGLE 126 Query: 157 RIRAGCDGMDAAKTNEEF-VAADIAFHQAIYFATRNEFFWPIAQMFEITLRQSFTIAAPG 215 IR G M AA E+ ++ADIAFH AI AT+N F+ + ++ LR S Sbjct: 127 EIRKGLRRMKAAAEGEDDPLSADIAFHIAILNATKNPFYRELHELVNTALRISIRFTNRI 186 Query: 216 SHRPRALREHRAVLDAIAAGDAETARAATVV 246 R ++ H V +AIAA D E RAA V+ Sbjct: 187 KGRTASIPSHEDVYNAIAARDCE--RAAAVM 215 >mll1686 [K] COG2186 Transcriptional regulators Mlo Mesorhizobium loti Length = 258 Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 124/246 (50%), Gaps = 5/246 (2%) Query: 18 QAATAARPSMFQTSNALR---RSVHSQVTDRVGSSIVRGEIGVGETLPPEIRICEMMDVS 74 + A+A RPS + +A R SVH+ + +G IVRG+ G LP E + E VS Sbjct: 14 KPASAERPSGVRRPDAARIPGASVHTSLASEIGLRIVRGDYPPGTILPNEAKWSETFSVS 73 Query: 75 RTVVREAIRTLTGKGLIESRPKSGTRVRPPEQWNQLDPDVLRWHLESAEIDRYLAKLFQL 134 R+ VREAI+ L K L+ SRPK G+ V P E+WN LD DVL W+ S + + +L + + Sbjct: 74 RSAVREAIKMLMAKSLLASRPKIGSWVEPRERWNLLDRDVLAWYATSPDREVFLKTVQEF 133 Query: 135 RAAVEPAAAALAATHAEEVDVARIRAGCDGMDAAKTNEEFVAADIAFHQAIYFATRNEFF 194 R +EP A A AA E +A I C M A + +E AD FH AI A+ N+ Sbjct: 134 RHIIEPEATAFAAMRRTEEQMAEISQACREMGEAASLQERTRADTRFHLAILRASGNDLL 193 Query: 195 WPIAQMFEITLRQSFTIAAPGSHRPRALRE-HRAVLDAIAAGDAETARAATVVLLTNSAD 253 P+ + E FT +++ H A+ I + ARAA LL N+ D Sbjct: 194 VPLGVLIESAFDHLFTFTTRAVDDLNHVQKLHEAIEKNIRLQRPDAARAAVRKLLANT-D 252 Query: 254 DLVRIR 259 +++ R Sbjct: 253 HVIKSR 258 >STM3888 [K] COG2186 Transcriptional regulators Sty Salmonella typhimurium LT2 Length = 234 Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 5/219 (2%) Query: 33 ALRRSVHSQVTDRVGSSIVRGEIGVGETLPPEIRICEMMDVSRTVVREAIRTLTGKGLIE 92 A ++++ + +++ I++G+ G LP EI + E VSRT VREA++TLT KG++ Sbjct: 9 AAQKNLSYVLAEKLAQRILKGDYAPGTILPGEIELGEQYGVSRTAVREAVKTLTAKGMVL 68 Query: 93 SRPKSGTRVRPPEQWNQLDPDVLRWHLESAEIDRYLAKLFQLRAAVEPAAAALAATHAEE 152 RP+ GTRV P WN LD ++L W + + + +R ++EP A LAAT Sbjct: 69 PRPRIGTRVMPQGNWNFLDQELLTWWMTEENFHQVVEHFLVMRISLEPQACLLAATLGTP 128 Query: 153 VDVARIRAGCDGMDAAKTN---EEFVAADIAFHQAIYFATRNEFFWPIAQMFEITLRQSF 209 AR+ A + M A K + E ++ D+A+H+ IY + N F A +F F Sbjct: 129 EQKARLNALMEEMVALKKHFKRERWIEVDMAWHEHIYEMSANPFLISFATLFHSVYHTYF 188 Query: 210 TIAAPGSHRPRALREHRAVLDAIAAGDAETARAATVVLL 248 T + + L H+A++DAIA GD E A A LL Sbjct: 189 T--SITYNEVVKLDLHQAIVDAIADGDGERAFQACQALL 225