BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0033.p (620 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc00266_2 [G] COG1593 TRAP-type C4-dicarboxylate transport syst... 201 3e-51 AGl113_2 [G] COG1593 TRAP-type C4-dicarboxylate transport system... 195 2e-49 AGl113_1 [G] COG3090 TRAP-type C4-dicarboxylate transport system... 109 2e-23 SMb21436 [G] COG1593 TRAP-type C4-dicarboxylate transport system... 102 3e-21 AGl3348 [G] COG1593 TRAP-type C4-dicarboxylate transport system,... 102 4e-21 >SMc00266_2 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Sme Sinorhizobium meliloti Length = 419 Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 104/173 (60%), Positives = 134/173 (77%) Query: 198 VIFFVVVVASAVFTGVPIAFSFGLATFGYLMLTTRTPPLIIVGRIDEGVSHLILLSVPLF 257 +IF V A + GVPIAF FG+AT +L TT P ++++GR+DEG+S LILLSVP+F Sbjct: 1 LIFLVGGAAVCLAMGVPIAFCFGIATLLFLAFTTSMPLVVMIGRMDEGMSSLILLSVPVF 60 Query: 258 VFLGQLIEMTGMARAMVAFLASLLGHVRGGLLYVLVGAMYLVSGISGSKAADMAAVAPVL 317 V LG +++ TGM +A+V FLAS+LGHV+ G+ YVL+G+++LVSGISGSK +DMA VAP L Sbjct: 61 VLLGCILDATGMGKAIVDFLASMLGHVKAGMSYVLLGSLFLVSGISGSKVSDMATVAPAL 120 Query: 318 FPEMKRRGAKEGDLVALLAATGAQTETIPPSIVLITIGSVTGVSIAALFTGGL 370 FPEMKRRG K +++ALLA A +T+PPSIVLI +GSV GVSIAALFT G Sbjct: 121 FPEMKRRGHKPKEMIALLATGAAMADTVPPSIVLIVLGSVAGVSIAALFTSGF 173 >AGl113_2 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 403 Score = 195 bits (496), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 99/184 (53%), Positives = 136/184 (73%) Query: 214 PIAFSFGLATFGYLMLTTRTPPLIIVGRIDEGVSHLILLSVPLFVFLGQLIEMTGMARAM 273 PIAF FGL T YL TT P ++++GR+DEG+S +ILLSVP+FV LG +++ TGM +A+ Sbjct: 1 PIAFCFGLGTLAYLTFTTWVPTIVMIGRMDEGMSGIILLSVPVFVLLGCVLDATGMGKAI 60 Query: 274 VAFLASLLGHVRGGLLYVLVGAMYLVSGISGSKAADMAAVAPVLFPEMKRRGAKEGDLVA 333 V L+S+ GH+R G+ YVL+G+++LVSGISGSK +DMA VAP LFPEMKRRG K +++A Sbjct: 61 VELLSSMFGHIRAGMSYVLLGSLFLVSGISGSKVSDMATVAPALFPEMKRRGHKPKEMIA 120 Query: 334 LLAATGAQTETIPPSIVLITIGSVTGVSIAALFTGGLLPGVILAITLCCVIAWRYRNEDR 393 LLA A +T+PPSIVLI +GS GVSIA LFT G + ++L + L + W+ R+E+ Sbjct: 121 LLATGAAMADTVPPSIVLIVLGSAAGVSIAGLFTSGFMIAMVLLLVLAVLARWKARDENM 180 Query: 394 SLAR 397 A+ Sbjct: 181 EGAK 184 >AGl113_1 [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 228 Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/192 (39%), Positives = 110/192 (57%) Query: 22 RLLEVCVSILLAAEILLLFAGVLARYVFLKPIIWSDELASMLFLWLVMLGSAIALRRGEH 81 R +E ++LLA I LL GV +RY PI+W DE AS+ FLW MLG+AIA+ R EH Sbjct: 37 RPIEAVAAVLLAMMIGLLLLGVTSRYALHLPIVWIDETASLCFLWFAMLGAAIAIDRSEH 96 Query: 82 MRMTALFAFVSPRMRAQLDTIALAASLGLVVLLFPAALEYAIEEAIVRTPAMDLSNAWRA 141 +R+T R+ ++++AL + + A+EYAIEE +V + A+++ ++RA Sbjct: 97 LRLTLFLNMFPQRVLGYINSLALVLVATFLAAIIKPAMEYAIEEWVVTSAALNIPMSFRA 156 Query: 142 TAAPVGFGLMGIFALLRLVRLADTRLIFSSLGTVAFIVGLFWLLQPLFAPLGNINLVIFF 201 A PVG LM + L L R + R I ++ TVA GL +L P+ LGN+NL IF Sbjct: 157 AALPVGACLMLLLVLNNLFRRENLRDIIAAFVTVAVAAGLLYLASPMLESLGNLNLAIFL 216 Query: 202 VVVVASAVFTGV 213 + VA + GV Sbjct: 217 GLFVAVFLVLGV 228 >SMb21436 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Sme Sinorhizobium meliloti Length = 426 Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 95/178 (53%) Query: 214 PIAFSFGLATFGYLMLTTRTPPLIIVGRIDEGVSHLILLSVPLFVFLGQLIEMTGMARAM 273 PIA + L++ YL++ P +++ R+ G+ LL++PLF+ G L+ G+A + Sbjct: 21 PIAIALALSSVAYLLVGDVLPLMVVAQRMVAGIDSFTLLAIPLFLLAGLLMVHGGLAPRI 80 Query: 274 VAFLASLLGHVRGGLLYVLVGAMYLVSGISGSKAADMAAVAPVLFPEMKRRGAKEGDLVA 333 V A+++G GGL V++ A + +SGS AD+ A+ +L P MK RG G A Sbjct: 81 VNLCAAVVGQRTGGLAIVMIAACMMFGSLSGSGVADVVAIGSMLLPAMKERGYHPGFSAA 140 Query: 334 LLAATGAQTETIPPSIVLITIGSVTGVSIAALFTGGLLPGVILAITLCCVIAWRYRNE 391 L G+ IPPSIVLI G+ TG SI LF + PG++L L V W R Sbjct: 141 GLGCAGSLGTVIPPSIVLIVYGTATGTSIGQLFIHSIGPGILLGFGLMVVAWWISRKN 198 >AGl3348 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 426 Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 102/171 (59%), Gaps = 3/171 (1%) Query: 212 GVPIAFSFGLATFGYLMLTTRTPPLIIVGRIDEGVSHLILLSVPLFVFLGQLIEMTGMAR 271 G PIAF G+A+F + L PP+++ +++ G++ ++++P F+F G L+ G+A Sbjct: 17 GTPIAFCLGIASFATV-LYLGLPPIVVFQQMNSGMNVFAMMAIPFFIFAGDLMVRGGIAH 75 Query: 272 AMVAFLASLLGHVRGGLLYVLVGAMYLVSGISGSKAADMAAVAPVLFPEMKRRGAKEGDL 331 ++ F A L+GH+RGGL V + A L GISGS AD +AV ++ P+M +RG + Sbjct: 76 RLIRFAAGLVGHLRGGLGQVNIVASTLFGGISGSAVADASAVGGLMIPQMAKRGYDKDYA 135 Query: 332 VALLAATGAQTETIPPS--IVLITIGSVTGVSIAALFTGGLLPGVILAITL 380 V + IPPS ++L +I + VS+A LFT G++PG++LA L Sbjct: 136 VNVTVNAAIIALMIPPSHNMILYSIAAGGNVSVADLFTAGIIPGLLLAAAL 186