BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0029.p (302 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0037 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 155 9e-38 PA2930 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 144 3e-34 AGl895 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 142 9e-34 YPO1029 [K] COG0583 Transcriptional regulator Ype Yersinia pestis 135 8e-32 gcvA [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 130 3e-30 >PA0037 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 295 Score = 155 bits (393), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 100/296 (33%), Positives = 153/296 (51%), Gaps = 8/296 (2%) Query: 1 MARPKPSLNALRAFEATARLRSMTAASLELSVTHGAISRHIRSLEELLGVPLLVRTSSST 60 M+R PSLNALRAFEA ARL S++ A+ EL VTHGA+SR +R LE+ LGV L + Sbjct: 1 MSRDLPSLNALRAFEAAARLHSISLAAEELHVTHGAVSRQVRLLEDDLGVALFGKDGRGV 60 Query: 61 DPTPEGSRLAEGLTAAFNLIDGSV----EQILPGPLTVSCSATIMMYWLIPRLAGFHEAH 116 T G RL + AF + G Q P + +++ W IPRL + A Sbjct: 61 KLTDSGVRLRDACGDAFERLRGVCAELRRQTAEAPFVLGVPGSLLARWFIPRLDQLNRAL 120 Query: 117 RNIDLQFNMNYDQVDFIRDKVSVAIRSSTITPPKDVVIKELAREWISPVCATSYAKANRL 176 ++ LQ + + + D R + + + P D+ + ELA E + PV + A+ L Sbjct: 121 PDLRLQLSTSEGEFDPRRPGLDAMLWFAEPPWPADMQVFELAPERMGPVVSPRLAQETGL 180 Query: 177 RR--PSDIADCRLLGTRTRPEAWSDWLDELGLRQD-VRIQESYEHFYLLIQAALCGLGLA 233 + + + LL T +RP+AW W GL + +R + +EH Y L++AA+ GLG+A Sbjct: 181 AQAPAARLLQEPLLHTASRPQAWPAWAASQGLAAEALRYGQGFEHLYYLLEAAVAGLGVA 240 Query: 234 LVPTMFVLEEINSGRLVAPFGSIPGKRMLMLWTAPHVASRPESRAVSNWLTREMSA 289 + P V +++ +GRL AP+G I L LW P P + ++ WL +++ Sbjct: 241 IAPEPLVRDDLAAGRLAAPWGFIETDARLALWV-PARLHDPRAGRLAQWLREQLAG 295 >PA2930 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 308 Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 144/292 (49%), Gaps = 10/292 (3%) Query: 6 PSLNALRAFEATARLRSMTAASLELSVTHGAISRHIRSLEELLGVPLLVRTSSSTDPTPE 65 PSLNALR FEA ARL + + A+ L +THGAISR +R+LEE LG L R + Sbjct: 19 PSLNALRCFEAAARLENFSRAAEALCLTHGAISRAVRTLEEELGCALFERRGQRVFLSEA 78 Query: 66 GSRLAEGLTAAFNLIDGSVEQIL----PGPLTVSCSATIMMYWLIPRLAGFHEAHRNIDL 121 G RL G A +LI+ + E + P L +SC T++M WLIPR+AGF + + + Sbjct: 79 GRRLLAGTGPALDLIERTSETLRAEAGPTALVLSCEPTLLMRWLIPRIAGFMQEQPRLSI 138 Query: 122 QFNMNYDQVDFIRDKVSVAIRSSTITPPKDVVIKELAREWISPVCATSYAKAN---RLRR 178 Q F + +AIR + P L E + PVC S + + Sbjct: 139 QLVAGGGPFAF-GHGIDLAIRRNDFLWPPGSHAHWLFDEQVGPVCRASDVERHFHLDAGP 197 Query: 179 PSDIADCRLLGTRTRPEAWSDWLDELGLRQDVRIQESYEHFYLLIQAALCGLGLALVPTM 238 P A L T TRP+AW+ W G + +EHFYL +QAA GLG+A+ P Sbjct: 198 PGLRAVAPRLHTATRPQAWNTWTRLAGQAPATTEGQRFEHFYLSLQAAGAGLGVAIGPWQ 257 Query: 239 FVLEEINSGRLVAPFGSIP-GKRMLMLWTAPHVASRPESRAVSNWLTREMSA 289 V +++++G L AP G + G +L P A P + + WL R +A Sbjct: 258 LVRDDLSAGLLAAPLGFLADGSSYHLLTPRPLQAGEPAT-LLLEWLRRSAAA 308 >AGl895 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 306 Score = 142 bits (358), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 90/252 (35%), Positives = 130/252 (51%), Gaps = 5/252 (1%) Query: 6 PSLNALRAFEATARLRSMTAASLELSVTHGAISRHIRSLEELLGVPLLVRTSSSTDPTPE 65 PS +AL AF++ ARL S +AA+ EL++T GAISR + SLEE LGV L R + T E Sbjct: 10 PSTSALAAFDSVARLGSFSAAADELALTQGAISRQVMSLEEQLGVRLFERGARGVSLTTE 69 Query: 66 GSRLAEGLTAAFNLIDGSVEQILP----GPLTVSCSATIMMYWLIPRLAGFHEAHRNIDL 121 GS A+ + AA I + QI+ L ++ T WL+PR+ F H I + Sbjct: 70 GSAYAKSIAAALGEIRSASLQIMTKTHGNTLNLAMLPTFGTRWLLPRIPDFVANHPEITI 129 Query: 122 QFNMNYDQVDFIRDKVSVAIRSSTITPPKDVVIKELAREWISPVCATSYAKANRLRRPSD 181 F Q DF R+++ +AI P L E ++PVC+ + A+ + + D Sbjct: 130 NFATRIGQFDFEREQLDMAIHIGQADWP-GAESTFLMHEMVAPVCSPQFLSAHPVEKGED 188 Query: 182 IADCRLLGTRTRPEAWSDWLDELGLRQDVRIQESYEHFYLLIQAALCGLGLALVPTMFVL 241 IA LL +RP AW W + LGL + +E F + QA + GLG+AL+P + Sbjct: 189 IAALPLLHMASRPGAWGHWFESLGLSLALPQGMRFEQFSSVAQACIAGLGVALMPLFLID 248 Query: 242 EEINSGRLVAPF 253 E+ S +LV F Sbjct: 249 NELKSKQLVKAF 260 >YPO1029 [K] COG0583 Transcriptional regulator Ype Yersinia pestis Length = 305 Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 94/263 (35%), Positives = 142/263 (53%), Gaps = 10/263 (3%) Query: 1 MARPKPSLNALRAFEATARLRSMTAASLELSVTHGAISRHIRSLEELLGVPLLVRTSSST 60 M++ P LNALRAF+A AR S T A+ EL VT A+S I+SLE+ LG+ L R + S Sbjct: 1 MSKRLPPLNALRAFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSL 60 Query: 61 DPTPEGSRLAEGLTAAFNLIDGSVEQI----LPGPLTVSCSATIMMYWLIPRLAGFHEAH 116 T EG + F I+ + ++ G LTVS + + WL+PRL+GF+ A+ Sbjct: 61 LLTEEGQSYYLDIKEIFTSINEATRKLQARSAKGALTVSLPPSFAIQWLVPRLSGFNAAY 120 Query: 117 RNIDLQFNMNYDQVDFIRDKVSVAIRSSTITPPKDVVIKELAREWISPVCATSYAKA-NR 175 ID++ + D + D V VAI + + L E++ PVCA S N Sbjct: 121 PGIDVRIQAVDREEDKLADDVDVAIFYGR-GNWSGLRTERLYAEFLLPVCAPSLLTGENG 179 Query: 176 LRRPSDIADCRLLGTRTRPEAWSDWLDELGLRQDVRIQES--YEHFYLLIQAALCGLGLA 233 L+ PSD+A+ LL +R + W + +LG+ Q + +Q+ + H +++QAA+ G G+A Sbjct: 180 LKVPSDLANHTLLHDTSRRD-WLAYTRQLGVPQ-INVQQGPIFSHSAMVVQAAVHGQGIA 237 Query: 234 LVPTMFVLEEINSGRLVAPFGSI 256 LV + EI +GRLV PF + Sbjct: 238 LVNNVMAQSEIEAGRLVCPFNDV 260 >gcvA [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 305 Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 139/263 (52%), Gaps = 10/263 (3%) Query: 1 MARPKPSLNALRAFEATARLRSMTAASLELSVTHGAISRHIRSLEELLGVPLLVRTSSST 60 M++ P LNALR F+A AR S T A+ EL VT A+S I+SLE+ LG+ L R + S Sbjct: 1 MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSL 60 Query: 61 DPTPEGSRLAEGLTAAFNLIDGSVEQI----LPGPLTVSCSATIMMYWLIPRLAGFHEAH 116 T EG + F+ + + ++ G LTVS + ++WL+PRL+ F+ A+ Sbjct: 61 LLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLPSFAIHWLVPRLSSFNSAY 120 Query: 117 RNIDLQFNMNYDQVDFIRDKVSVAIRSSTITPPKDVVIKELAREWISPVCATSYAKANR- 175 ID++ Q D + D V VAI P + +++L E++ PVC+ + Sbjct: 121 PGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWP-GLRVEKLYAEYLLPVCSPLLLTGEKP 179 Query: 176 LRRPSDIADCRLLGTRTRPEAWSDWLDELGLRQDVRIQES--YEHFYLLIQAALCGLGLA 233 L+ P D+A LL +R + W + +LGL + +Q+ + H +++QAA+ G G+A Sbjct: 180 LKTPEDLAKHTLLHDASRRD-WQTYTRQLGLNH-INVQQGPIFSHSAMVLQAAIHGQGVA 237 Query: 234 LVPTMFVLEEINSGRLVAPFGSI 256 L + EI +GRLV PF + Sbjct: 238 LANNVMAQSEIEAGRLVCPFNDV 260