BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0020.p (301 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEI0392 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-typ... 329 6e-90 YPO0859 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 306 5e-83 BS_rbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 266 5e-71 VCA0129 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 264 2e-70 BH2321 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 256 3e-68 >BMEI0392 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bme Brucella melitensis Length = 334 Score = 329 bits (843), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 181/310 (58%), Positives = 230/310 (74%), Gaps = 9/310 (2%) Query: 1 LKSFSIVIVFVVISAFFAVANEYFMTWLNWVNLLRQSSINGILAIGVTFVILTKGIDLSV 60 ++ + I I F++++ + +NEYF+T N N+L Q+SINGILAIG+TFVILT+GIDLSV Sbjct: 22 IQEYGIFIAFLLLATILSFSNEYFLTAGNISNVLLQTSINGILAIGMTFVILTRGIDLSV 81 Query: 61 GSVMALAGMIAASLVTSTNQ-------HFVLWAILAGAGTGAALGLVNGVIVTSFNVPPF 113 GSV+ALAG+++AS T++ + AI G G G + G IV+ F VP F Sbjct: 82 GSVVALAGIVSASFATTSAMAGIAGAPYSPFIAICVGLLVGIGCGALVGTIVSRFAVPAF 141 Query: 114 VATLGMLSMARGMTLIFSDGRPVPNLSESFRWIGGGSX--VPVPVLILFLVFAIGWIVLS 171 VATLGMLS ARG+TLI+ G+PVP L FRWIG G+ VPVPV++L +VF + W +L+ Sbjct: 142 VATLGMLSAARGLTLIYGGGKPVPALVPDFRWIGTGNILGVPVPVILLAIVFLVSWWILN 201 Query: 172 YTTFGRYVYAVGGNEKAARTSGISTRTVVASTYVISGLLAGLAGLVLTSRTTAALPQAGI 231 + FGRY+YAVGGN AA TSGI+ V S YVISG LAGLAG++L++RT +ALPQAGI Sbjct: 202 RSRFGRYIYAVGGNPHAANTSGINISRVRFSVYVISGGLAGLAGMILSARTGSALPQAGI 261 Query: 232 GYELDAIAAVVIGGTSLAGGRGSLIGTLFGALIIGTINNGMDLMGVSSYYQQLLKGAIII 291 YELDAIAAVVIGGTSL+GG G + GTL GALIIG +NNG+DLMG+ SYYQQ+LKGA+I+ Sbjct: 262 SYELDAIAAVVIGGTSLSGGIGRITGTLIGALIIGVMNNGLDLMGIQSYYQQVLKGALIV 321 Query: 292 VAVMLDQFRK 301 AVMLDQ R Sbjct: 322 GAVMLDQKRS 331 >YPO0859 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ype Yersinia pestis Length = 336 Score = 306 bits (783), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 168/322 (52%), Positives = 224/322 (69%), Gaps = 22/322 (6%) Query: 1 LKSFSIVIVFVVISAFFAVANE-----------YFMTWLNWVNLLRQSSINGILAIGVTF 49 + + I++ FV + A A+A E YF++ N + +LRQ SINGILAIG+TF Sbjct: 15 IHQYGIILAFVGLCAVIALAGEFAVNSGTWSENYFLSRDNTLIILRQVSINGILAIGMTF 74 Query: 50 VILTKGIDLSVGSVMALAGMIAASLVTSTNQHFVL----WAILA----GAGTGAALGLVN 101 VI+T G+DLSVG+V+ LAG++AA T+ N L W +L G G G +N Sbjct: 75 VIITAGVDLSVGAVLGLAGIVAARFATN-NSAIALGGTDWPLLVPIVIAIGIGLVCGAIN 133 Query: 102 GVIVTSFNVPPFVATLGMLSMARGMTLIFSDGRPVPNLSESFRWIGGGSX--VPVPVLIL 159 G I+ + + PF+ T+GMLS+ARG+TL+ + G PV L++ FRW+G G +PVPVLI Sbjct: 134 GFILGKYRLQPFIVTMGMLSVARGLTLLTTGGNPVSQLTDEFRWLGNGYILGIPVPVLIF 193 Query: 160 FLVFAIGWIVLSYTTFGRYVYAVGGNEKAARTSGISTRTVVASTYVISGLLAGLAGLVLT 219 ++FAI W VL+ TFGRYVYAVGGNEK+ARTSGI+ + + Y + G+LA +AGL+LT Sbjct: 194 IILFAIAWFVLNKMTFGRYVYAVGGNEKSARTSGINVLRIKVAVYTLCGILAAIAGLILT 253 Query: 220 SRTTAALPQAGIGYELDAIAAVVIGGTSLAGGRGSLIGTLFGALIIGTINNGMDLMGVSS 279 +RT +A AG+ YELDAIAAVVIGGTS+AGG G+L GTLFG LIIG +NNG+DL+GV S Sbjct: 254 ARTGSAQTGAGVSYELDAIAAVVIGGTSMAGGIGTLRGTLFGVLIIGVMNNGLDLLGVQS 313 Query: 280 YYQQLLKGAIIIVAVMLDQFRK 301 YYQQ++KG +I+ AVMLD RK Sbjct: 314 YYQQIIKGVLIVFAVMLDPSRK 335 >BS_rbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bsu Bacillus subtilis Length = 322 Score = 266 bits (679), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 142/287 (49%), Positives = 204/287 (71%), Gaps = 6/287 (2%) Query: 18 AVANEYFMTWLNWVNLLRQSSINGILAIGVTFVILTKGIDLSVGSVMALAGMIAASLVTS 77 ++ N F+ LN +NLLRQ +ING++A G+TFVILT GIDLSVG+++AL+ + A ++ S Sbjct: 36 SILNPSFLEPLNILNLLRQVAINGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVS 95 Query: 78 TNQHFVLWAILAGAGTGAALGLVNGVIVTSFNVPPFVATLGMLSMARGMTLIFSDGRPVP 137 + AI+ G GA LG++NG+++T + PF+ATL +++ RG+TL+++DG P+ Sbjct: 96 GVDP--VLAIILGCIIGAVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPIT 153 Query: 138 NLSES--FRWIGGGSX--VPVPVLILFLVFAIGWIVLSYTTFGRYVYAVGGNEKAARTSG 193 L + F+ G G +PVP + + L F I W++L T FGR YA+GGNEKAA SG Sbjct: 154 GLGTNYGFQMFGRGYFLGIPVPAITMVLAFVILWVLLHKTPFGRRTYAIGGNEKAALISG 213 Query: 194 ISTRTVVASTYVISGLLAGLAGLVLTSRTTAALPQAGIGYELDAIAAVVIGGTSLAGGRG 253 I V Y ++GLL+ LAG +LTSR +A P AG YELDAIAAVV+GGTSL+GGRG Sbjct: 214 IKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPTAGESYELDAIAAVVLGGTSLSGGRG 273 Query: 254 SLIGTLFGALIIGTINNGMDLMGVSSYYQQLLKGAIIIVAVMLDQFR 300 ++GTL G LIIGT+NNG++L+GVSS+YQ ++KG +I++AV+LD+ + Sbjct: 274 RIVGTLIGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLDRKK 320 >VCA0129 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Vch Vibrio cholerae Length = 332 Score = 264 bits (674), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 151/305 (49%), Positives = 213/305 (69%), Gaps = 11/305 (3%) Query: 2 KSFSIVIVFVVISAFFAVANEYFMTWLNWVNLLRQSSINGILAIGVTFVILTKGIDLSVG 61 KS ++ VV+ +F N F T N +N+LRQ+S+N I+A+G+T VILT GIDLSVG Sbjct: 33 KSLIALLFLVVVVSFL---NPNFFTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVG 89 Query: 62 SVMALAGMIAASLVTSTNQHFVLWAILAGAGTGAALGLVNGVIVTSFNVPPFVATLGMLS 121 SV+AL G AA+LV + VL A+ GAALG ++G+I+ V F+ATL ++ Sbjct: 90 SVLALCGAFAATLVAM--EVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMT 147 Query: 122 MARGMTLIFSDGRPVP----NLSESFRWIGGGSX--VPVPVLILFLVFAIGWIVLSYTTF 175 + RG+T++++DGRP+ + +++F W G G +PVPV ++ +VFA W +L++T F Sbjct: 148 LLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNHTRF 207 Query: 176 GRYVYAVGGNEKAARTSGISTRTVVASTYVISGLLAGLAGLVLTSRTTAALPQAGIGYEL 235 GRYVYAVGGNE A R SGI+ V Y I GLLA LAG+++TSR ++A P AG+GYEL Sbjct: 208 GRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYEL 267 Query: 236 DAIAAVVIGGTSLAGGRGSLIGTLFGALIIGTINNGMDLMGVSSYYQQLLKGAIIIVAVM 295 DAIAAVV+GGTSL GG+G ++GTL GALIIG +NN ++L+ VSSYYQ + K +I++AV+ Sbjct: 268 DAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVL 327 Query: 296 LDQFR 300 +D + Sbjct: 328 VDNKK 332 >BH2321 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bha Bacillus halodurans Length = 324 Score = 256 bits (655), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 145/281 (51%), Positives = 204/281 (72%), Gaps = 5/281 (1%) Query: 23 YFMTWLNWVNLLRQSSINGILAIGVTFVILTKGIDLSVGSVMALAGMIAASLVTSTNQHF 82 +F+T N VN++RQ SI GILAIGVT +I+TKGIDLS GS++AL ++ AS + Sbjct: 43 HFLTSTNLVNIVRQMSIIGILAIGVTPIIITKGIDLSSGSLIALVSVVVASFAQGDS--- 99 Query: 83 VLWAILAGAGTGAALGLVNGVIVTSFNVPPFVATLGMLSMARGMTLIFSDGRPVPNLSES 142 ++ IL G G G +GL+NG +V + PF+ TLGM++ ARG +++SDGRP+ L+E Sbjct: 100 IMLPILMGVGVGLLIGLINGTLVAKAMLAPFIVTLGMMTAARGAAMLYSDGRPIGGLNEK 159 Query: 143 FRWIGGGSX--VPVPVLILFLVFAIGWIVLSYTTFGRYVYAVGGNEKAARTSGISTRTVV 200 F +IG G +PVPVLI V + W++L+ T +G+Y+YA+GGNE+AA T+GI+ V Sbjct: 160 FAFIGQGVIFGIPVPVLIFAFVGIVTWVLLNKTKYGKYIYAIGGNEQAAITAGINVSRVK 219 Query: 201 ASTYVISGLLAGLAGLVLTSRTTAALPQAGIGYELDAIAAVVIGGTSLAGGRGSLIGTLF 260 Y +GLLAG+AG++LTSR ++ PQAG+ +ELDAIA+ VIGGTSL GG G++ GT+ Sbjct: 220 MFVYSYAGLLAGIAGIILTSRISSGQPQAGVMFELDAIASAVIGGTSLFGGIGTVGGTII 279 Query: 261 GALIIGTINNGMDLMGVSSYYQQLLKGAIIIVAVMLDQFRK 301 GALIIG +NNG+DL+GVSSY+QQ++KGAII+ AV +D + Sbjct: 280 GALIIGVMNNGLDLLGVSSYWQQIVKGAIIVSAVYIDTRKN 320