BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0095.0041.p         (226 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1520 Non COG                                                       202   3e-52
PA5273 [S] COG4278 Uncharacterized conserved protein Pae Pseudom...   148   9e-36

>RSp1520 Non COG
          Length = 232

 Score =  202 bits (515), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/206 (50%), Positives = 126/206 (61%), Gaps = 3/206 (1%)

Query: 6   ASAFFGVLAAAAVVGSAVLFGKWQTLRRAEYIRTFHWPAGLLARLEKRHPGFTRKDSALV 65
           A+ F  +L    ++     +G WQ  +R  +IR + WP G + R   +HPG +  D A V
Sbjct: 5   ATGFSALLTGVGLLFVLGRWGTWQRTQRETFIRAYAWPPGPMERFADKHPGRSAADRAQV 64

Query: 66  SRGLRQFFLAYLMSGKRYVSMPSQAADDLWHEFILYTREYDAFCRRAFGGFLHHTPAVVL 125
            + LRQFFL +L S   YVSMPS+  DDLWHEFILYTREY  FC RAFG  LHH P+  L
Sbjct: 65  EQALRQFFLVHLRSDCGYVSMPSRVVDDLWHEFILYTREYRDFCSRAFGKCLHHLPSAAL 124

Query: 126 VKERRRSNEGLRRVWWYCCKYENIDPVRPTRLPLLFALDAKLNIANGFIYHTDCETLRRS 185
              R+ SN GLRR W + C  E I+P RP RLPLLFA+DAKL I  GF Y  DC T +  
Sbjct: 125 SPVRKPSNIGLRRTWSWACHDEGINPRRPDRLPLLFAIDAKLAIPKGFFYLPDCATRQH- 183

Query: 186 GIGGSSPYCGGDFSDSSIDGSSAGFG 211
             G  + +CG DFS   +DGS AGFG
Sbjct: 184 --GSETVHCGADFSSRHVDGSIAGFG 207


>PA5273 [S] COG4278 Uncharacterized conserved protein Pae Pseudomonas
           aeruginosa
          Length = 237

 Score =  148 bits (374), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 106/183 (57%), Gaps = 6/183 (3%)

Query: 36  YIRTFHWPAGLLARLEKRHPGFTRKDSALVSRGLRQFFLAYLMSGKRYVSMPSQAADDLW 95
           +I+ F  P  +   + +R+P  + +    V  GLR++ L    +GKR V+MPSQ  D  W
Sbjct: 31  FIQQFRLPPRVTQAVRERYPQLSEEQVQRVLGGLREYLLLCRAAGKRMVAMPSQVVDVAW 90

Query: 96  HEFILYTREYDAFCRRAFGGFLHHTPAVVLVKERRRSNEGLRRVWWYCCKYENIDPVRPT 155
           HE IL+TR Y   CR+  G FLHHTPA  + +  R++ EG++R W   C+ E IDP+ PT
Sbjct: 91  HELILHTRLYQHVCRKGLGRFLHHTPAQAM-RSPRQAQEGIQRAWKLACRREGIDPLNPT 149

Query: 156 RLPLLFALDAKLNIANGFIYHTDCETLRRSGIGGSSPYCGGDFSDSSIDGSSAG--FGDA 213
           RLPLLFALD +L IA+GF Y  +C   +    GG++ YC      SS   S +G  FG  
Sbjct: 150 RLPLLFALDTELAIADGFRYALNCAQRQD---GGAAVYCASHIGCSSGCASDSGSTFGSD 206

Query: 214 GSD 216
           G D
Sbjct: 207 GQD 209