BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0095.0022.p         (93 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc4092 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymera...   102   2e-22
SMc02700 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymer...    97   9e-21
BMEI0463 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymer...    95   4e-20
mll2726 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymera...    94   1e-19
CC0408 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymeras...    74   8e-14

>AGc4092 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 435

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 59/82 (71%)

Query: 7   LSDAPWLASGPAAHVLGLLNADGEEARVIGGAVRNALMRIPLADIDIATTALPEEVIRRA 66
           L+   W        +  LLNADG E R++GGAVRNALM +P+ D+D+ATT  P  V+ RA
Sbjct: 21  LAGQDWFEKPALKRIFALLNADGGEVRIVGGAVRNALMDLPVVDVDMATTVTPNVVVERA 80

Query: 67  KRAGIKSVPTGIEHGTVTLVVD 88
           K AGIKSVPTGIEHGTVTLV+D
Sbjct: 81  KAAGIKSVPTGIEHGTVTLVID 102


>SMc02700 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Sme
          Sinorhizobium meliloti
          Length = 419

 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 59/80 (73%)

Query: 12 WLASGPAAHVLGLLNADGEEARVIGGAVRNALMRIPLADIDIATTALPEEVIRRAKRAGI 71
          W  +     +  LLNADG E RV+GGA+RN+LM +P  D+D+ATT  PEEV  RA  AGI
Sbjct: 9  WFQAPHLRRIFDLLNADGGEVRVVGGAIRNSLMGLPAGDVDLATTWRPEEVTERAGGAGI 68

Query: 72 KSVPTGIEHGTVTLVVDSLP 91
          K+VPTGI+HGTVTLV++ +P
Sbjct: 69 KAVPTGIDHGTVTLVIEGVP 88


>BMEI0463 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Bme
          Brucella melitensis
          Length = 423

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 1  MSE-VRLLSDAPWLASGPAAHVLGLLNADGEEARVIGGAVRNALMRIPLADIDIATTALP 59
          MSE + +   A WL + P   +   LN DG EARV+GGAVRN L+   ++D+D+ATT LP
Sbjct: 1  MSESINISGKADWLNAKPLQALFTALNRDGGEARVVGGAVRNTLLGTGVSDVDLATTHLP 60

Query: 60 EEVIRRAKRAGIKSVPTGIEHGTVTLVVDSLP 91
          EE +R A  AG K VPTG+EHGT+T+VV   P
Sbjct: 61 EETVRLASEAGFKPVPTGMEHGTITVVVQGYP 92


>mll2726 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Mlo
          Mesorhizobium loti
          Length = 420

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 56/82 (68%)

Query: 10 APWLASGPAAHVLGLLNADGEEARVIGGAVRNALMRIPLADIDIATTALPEEVIRRAKRA 69
          A WLA      +L  L    EEAR+ GGAVRN LM  P+AD+DIATT LP+E+IRRA+  
Sbjct: 9  ANWLADKHLQRLLAALAEGSEEARIAGGAVRNTLMGQPVADVDIATTCLPQEIIRRAEAE 68

Query: 70 GIKSVPTGIEHGTVTLVVDSLP 91
          G K VPTGIEHGTVT+V    P
Sbjct: 69 GFKPVPTGIEHGTVTVVAGGKP 90


>CC0408 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Ccr
          Caulobacter vibrioides
          Length = 413

 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 2/88 (2%)

Query: 6  LLSDAPWLASGPAAHVLGLLNADGEE--ARVIGGAVRNALMRIPLADIDIATTALPEEVI 63
          ++ +APW+A      V+  L A G    AR +GG VRN LM  P+ DIDIATT  P+ VI
Sbjct: 1  MIGNAPWIALPETKAVIAALEARGYAGCARFVGGCVRNTLMGKPVDDIDIATTLTPDLVI 60

Query: 64 RRAKRAGIKSVPTGIEHGTVTLVVDSLP 91
             ++AG++++PTG++HGT+T V    P
Sbjct: 61 DALEQAGLRAIPTGVDHGTITAVSGGRP 88