BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0095.0021.p (325 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll2726 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymera... 204 2e-52 CC0408 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymeras... 202 9e-52 BMEI0463 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymer... 199 7e-51 SMc02700 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymer... 196 7e-50 AGc4092 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymera... 189 8e-48 >mll2726 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Mlo Mesorhizobium loti Length = 420 Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 139/319 (43%), Positives = 173/319 (54%), Gaps = 20/319 (6%) Query: 1 VTTLREDTETYGRKARVAFGRDWVRDAERRDFTINGLSVDASGVVHDHVGGLADIEARRV 60 +TTLR D ET GR+A+V+FGRDW DAERRDFTIN L +A G V D VGG+ADIEARR+ Sbjct: 93 ITTLRADVETDGRRAKVSFGRDWKLDAERRDFTINALYAEADGRVVDLVGGIADIEARRL 152 Query: 61 RFIGDPAQRIAEDYLRILRLFRFHAAYGVGEVDRAGYLACVSGRAGLAGLSAERIRMEML 120 RFIGD RI EDYLRILR FRF A YG G D G AC + GLA LSAERI E+ Sbjct: 153 RFIGDAEARIREDYLRILRFFRFFAWYGEGRPDAEGLKACARLKEGLAQLSAERIWAELK 212 Query: 121 KLVVANGAASAVVAMSDGGLLQPLFGGIAYTGPFA--AMIEIEQLMKLAPSAMRRLAALT 178 KL+ A+ + A++ M G+L G A + + E+ + A M RL A+ Sbjct: 213 KLLSASDPSRALLWMRQAGVLSAALPESEKWGIDAIHGLTKAEKDLGWAADPMLRLEAIV 272 Query: 179 VAVTEDARRIASRLRLSNAEAKALDSMGHRWWRL-----PGMDEAHAKRRLYRLDEEPYR 233 + +A RLR S AE+ L R W L P + EA +RLYR D + Sbjct: 273 PPDAARMKTLAERLRFSTAESDRL-----RHWALATAVEPKVTEAELAKRLYRGDRQGLV 327 Query: 234 D--RLLLAWARTGAGQDVDQ------WRALATLPERWRAPHFPLRASDFVARGIAEGPAL 285 D RL LA AR A +D + + L +W P FPL+ +D A G GP L Sbjct: 328 DRLRLSLAGARVRAVEDNNALLEAGGFSRLLAFALKWEKPVFPLKGADLTALGATPGPKL 387 Query: 286 GHVLTLAEDAWLAADFPLD 304 G +L E W+ A F D Sbjct: 388 GEILNNLETEWIEAGFAPD 406 >CC0408 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Ccr Caulobacter vibrioides Length = 413 Score = 202 bits (514), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 122/305 (40%), Positives = 170/305 (55%), Gaps = 6/305 (1%) Query: 1 VTTLREDTETYGRKARVAFGRDWVRDAERRDFTINGLSVDASGVVHDHVG-GLADIEARR 59 +TTLR+D T GR+A VAF +DW +DAERRDF N L D G V+D G G+ D R Sbjct: 91 ITTLRKDVSTDGRRAVVAFTQDWNQDAERRDFRFNALYADTDGRVYDPTGEGIRDAHEGR 150 Query: 60 VRFIGDPAQRIAEDYLRILRLFRFHAAYGVGEVDRAGYLACVSGRAGLAGLSAERIRMEM 119 V F+GDP RI EDYLRILR FRF A YG GE D+ G AC + + ++G +AER + E+ Sbjct: 151 VVFVGDPMTRIREDYLRILRFFRFQAWYGRGEPDQKGLAACKALKGMVSGRAAERTQKEL 210 Query: 120 LKLVVANGAASAVVAMSDGGLLQPLFGGIAYTGPFAAM--IEIEQLMKLAPSAMRRLAAL 177 +K++ A+ A M+ +L + + F A+ IE EQL + P RLAAL Sbjct: 211 MKMLAADDPRPAFRLMAATSVLSSILPSVKSLARFEALVGIETEQLFENDPDL--RLAAL 268 Query: 178 TVAVTEDARRIASRLRL-SNAEAKALDSMGHRWWRLPGMDEAHAKRRLYRLDEEPYRDRL 236 + A ++A RLRL +N + ++++G + M A+R +Y L + DR+ Sbjct: 269 IPDDPKVAEQLAERLRLPNNVRDRLVEAVGKNPRVVSWMSPREARRAVYGLGTRTFCDRI 328 Query: 237 LLAWARTGAGQDVDQWRALATLPERWRAPHFPLRASDFVARGIAEGPALGHVLTLAEDAW 296 LAWA +G QWRAL L E W P FPL + + G+ +GP +G V+ E W Sbjct: 329 KLAWAGSGRDSTAPQWRALLALAETWNPPAFPLSGEEVMKAGVPKGPMVGEVMREIELWW 388 Query: 297 LAADF 301 + DF Sbjct: 389 IDQDF 393 >BMEI0463 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Bme Brucella melitensis Length = 423 Score = 199 bits (506), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 132/318 (41%), Positives = 170/318 (53%), Gaps = 10/318 (3%) Query: 1 VTTLREDTETYGRKARVAFGRDWVRDAERRDFTINGLSVDASGVVHDHVGGLADIEARRV 60 VTTLR D ET GR A+VAFG DW DAERRDFTIN L V A G V D VGGLADIE R + Sbjct: 95 VTTLRRDIETNGRHAKVAFGTDWKADAERRDFTINALYVTADGTVIDQVGGLADIETRTL 154 Query: 61 RFIGDPAQRIAEDYLRILRLFRFHAAYGVGEVDRAGYLACVSGRAGLAGLSAERIRMEML 120 RFIGD QRI EDYLRILR FRF A YG G + G A + G+A LSAERI EM Sbjct: 155 RFIGDAEQRIREDYLRILRFFRFFAWYGSGRPEAEGLRASARLKDGIAQLSAERIWSEMK 214 Query: 121 KLVVANGAASAVVAMSDGGLLQPLFGGIAYTGPFA--AMIEIEQLMKLAPSAMRRLAALT 178 KL+ A + A++ M G+L + G A ++ + + + RL +L Sbjct: 215 KLLGAPDPSRALLWMRQAGVLNLVLPESEKWGIDAIHGLVRTQSDLGWQADPLLRLESLV 274 Query: 179 VAVTEDARRIASRLRLSNAEAKALDSMGHRWWRLPGMDEAHAKRRLYRLDEEPYRDRLLL 238 + R+++SNAE L++ PG+ E K+ +YR ++ DR+ L Sbjct: 275 PPDAVRMEELGKRMKMSNAERARLEAWARADAVKPGLSEQALKKAIYRGSKQALLDRIRL 334 Query: 239 AWA---RTGAGQDVDQWRA-----LATLPERWRAPHFPLRASDFVARGIAEGPALGHVLT 290 A+A + G D RA L E + AP FP+ D +ARGI +GP LG L Sbjct: 335 AYAAARQEAVGSDEAMIRAGGVARLLDAAEHYDAPVFPITGGDLLARGIEKGPGLGETLR 394 Query: 291 LAEDAWLAADFPLDPQVL 308 E W+ + F LD + L Sbjct: 395 SLETLWIDSCFSLDREAL 412 >SMc02700 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Sme Sinorhizobium meliloti Length = 419 Score = 196 bits (498), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 136/321 (42%), Positives = 168/321 (52%), Gaps = 16/321 (4%) Query: 1 VTTLREDTETYGRKARVAFGRDWVRDAERRDFTINGLSVDASGVVHDHVGGLADIEARRV 60 +TTLR D T GR+A VAFG DW DAERRDFTIN L G + DHVGGL DIE R V Sbjct: 91 ITTLRRDVATDGRRAEVAFGTDWKADAERRDFTINALYAGVDGEIIDHVGGLGDIETRTV 150 Query: 61 RFIGDPAQRIAEDYLRILRLFRFHAAYGVGEVDRAGYLACVSGRAGLAGLSAERIRMEML 120 RFIG A+R+AEDYLRILR FRF A YG G D G AC RA LA LSAER+ E Sbjct: 151 RFIGSAAERVAEDYLRILRFFRFFAHYGSGRPDAEGLRACAQARAKLATLSAERVWTETK 210 Query: 121 KLVVANGAASAVVAMSDGGLLQPLFGGIAYTG--PFAAMIEIEQLMKLAPSAMRRLAALT 178 KL+ A+ A++ M G+L + G A+I E+ + RLAA+ Sbjct: 211 KLLSADDPGRALLWMRQAGVLSEILPETEKWGIDAIPALIAAEKSFSWRADPLLRLAAI- 269 Query: 179 VAVTEDARRI---ASRLRLSNAEAKALDSMGHRWWRLPGMDEAHAKRRLYRLDEE--PYR 233 V DA R+ RLRLS AE+ LD + +A +R+LYR E R Sbjct: 270 --VPPDAARLEAMTKRLRLSKAESAYLDRFAEAPEIAATLADAALERQLYRHGTEGIVVR 327 Query: 234 DRLLLAWARTGAGQ------DVDQWRALATLPERWRAPHFPLRASDFVARGIAEGPALGH 287 RL LA AR A D + L E+W+ P FPL +D + GI GP +G Sbjct: 328 LRLALASARRKAETDPAFLADSASFHRLLARAEKWQRPVFPLNGADVLKLGIPAGPKVGE 387 Query: 288 VLTLAEDAWLAADFPLDPQVL 308 VL E W+ +F ++ L Sbjct: 388 VLAELEAFWVERNFSVERATL 408 >AGc4092 [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 435 Score = 189 bits (480), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 135/319 (42%), Positives = 166/319 (52%), Gaps = 10/319 (3%) Query: 1 VTTLREDTETYGRKARVAFGRDWVRDAERRDFTINGLSVDASGVVHDHVGGLADIEARRV 60 VTTLR D ET GR A+VAFG DW DAERRD TIN L + G + D V GLAD+E R V Sbjct: 108 VTTLRRDVETNGRHAQVAFGTDWQTDAERRDLTINALYANEKGEIIDLVDGLADVETRTV 167 Query: 61 RFIGDPAQRIAEDYLRILRLFRFHAAYGVGEVDRAGYLACVSGRAGLAGLSAERIRMEML 120 RFIGD A RI+EDYLRILR FRF A YG G D G A + L LSAER+ E Sbjct: 168 RFIGDAAMRISEDYLRILRFFRFFAHYGSGRPDADGLRASARAKDKLGTLSAERVWSETK 227 Query: 121 KLVVANGAASAVVAMSDGGLLQPLFGGIAYTGPFA--AMIEIEQLMKLAPSAMRRLAALT 178 KL+ A + A++ M G+L + G A ++ EQ + A M RLAA+ Sbjct: 228 KLISARDPSRALLWMRQSGVLSEILPETEKWGIDAIHGLVATEQALGWAADPMLRLAAIV 287 Query: 179 VAVTEDARRIASRLRLSNAEAKALDSMGHRWWRLPGMDEAHAKRRLYRLDEEPYRDRLLL 238 E +A+RLRLS AEA L P M E R LYR E + RL L Sbjct: 288 PPDRERLAALAARLRLSKAEAAYLTHWASAPAVDPEMKETALDRLLYRQGVEAVKTRLKL 347 Query: 239 AWART--------GAGQDVDQWRALATLPERWRAPHFPLRASDFVARGIAEGPALGHVLT 290 A A A V + L T E++R P FPL +D +A G+ GP +G VL Sbjct: 348 ALASARADLSAGDTAMHKVARLSTLLTRAEKFRKPGFPLSGADVMAAGVEAGPKVGEVLK 407 Query: 291 LAEDAWLAADFPLDPQVLS 309 E+ W+ +F LD L+ Sbjct: 408 SLEEKWIDVNFSLDRAALT 426