BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0095.0013.p         (161 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc4082 [J] COG0219 Predicted rRNA methylase (SpoU class) Atu Ag...   189   3e-48
SMc00184 [J] COG0219 Predicted rRNA methylase (SpoU class) Sme S...   186   2e-47
BMEI0470 [J] COG0219 Predicted rRNA methylase (SpoU class) Bme B...   177   1e-44
mlr2718 [J] COG0219 Predicted rRNA methylase (SpoU class) Mlo Me...   172   2e-43
CC0471 [J] COG0219 Predicted rRNA methylase (SpoU class) Ccr Cau...   154   8e-38

>AGc4082 [J] COG0219 Predicted rRNA methylase (SpoU class) Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 161

 Score =  189 bits (479), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 108/147 (73%)

Query: 1   MQIALFQPDIPQNTGTILRLCACLDVSAHIIEPAGFDTSDRNFRRAGMDYLDHVRLKRHD 60
           ++IAL+QPDIP NTGTILRL ACL +   IIEPAGFD SDRN +RAGMDY+    L RH 
Sbjct: 12  IRIALYQPDIPGNTGTILRLAACLGLGVDIIEPAGFDISDRNLKRAGMDYIAAAALTRHV 71

Query: 61  SWSKFEEWRAEAGCRLVLFTTRAAKSYLDFAYTASDVLLFGRETAGVTDAVVAAADARLA 120
           SW +FEEWRA  G RLVL +TRAA  Y D  Y A D+LLFGRE+AGV D V   AD R+ 
Sbjct: 72  SWDRFEEWRASTGRRLVLASTRAALPYTDITYRADDILLFGRESAGVPDHVHDKADERII 131

Query: 121 IPIRPTMRSLNVAVTAAMAVGEALRQT 147
           IP+    RS+NVA++AAM  GEALRQT
Sbjct: 132 IPMVAGQRSINVAMSAAMVTGEALRQT 158


>SMc00184 [J] COG0219 Predicted rRNA methylase (SpoU class) Sme Sinorhizobium
           meliloti
          Length = 153

 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 113/149 (75%)

Query: 1   MQIALFQPDIPQNTGTILRLCACLDVSAHIIEPAGFDTSDRNFRRAGMDYLDHVRLKRHD 60
           ++IAL+QPDIP NTGTILRL ACL +S  IIEPAGFD SDRN +RAGMDY+  V + RHD
Sbjct: 4   LRIALYQPDIPGNTGTILRLAACLGLSVDIIEPAGFDLSDRNLKRAGMDYIAAVTMTRHD 63

Query: 61  SWSKFEEWRAEAGCRLVLFTTRAAKSYLDFAYTASDVLLFGRETAGVTDAVVAAADARLA 120
           SW +FE WR+  G RLVL +T+AA  Y  F++   DVLLFGRE+AGV D V   ADAR+ 
Sbjct: 64  SWERFETWRSSTGRRLVLASTKAAAPYTRFSFRPDDVLLFGRESAGVPDHVHERADARIL 123

Query: 121 IPIRPTMRSLNVAVTAAMAVGEALRQTGS 149
           IP+ P  RSLN+A+ AAM  GEALRQTG+
Sbjct: 124 IPMAPGQRSLNIAMAAAMIAGEALRQTGA 152


>BMEI0470 [J] COG0219 Predicted rRNA methylase (SpoU class) Bme Brucella
           melitensis
          Length = 171

 Score =  177 bits (448), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 108/149 (72%)

Query: 1   MQIALFQPDIPQNTGTILRLCACLDVSAHIIEPAGFDTSDRNFRRAGMDYLDHVRLKRHD 60
           +++AL+QPDIP NTGTILR+ ACL  +  +IEPAGFD SDR  +RAGMDYL+   L RH 
Sbjct: 15  LRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTRHP 74

Query: 61  SWSKFEEWRAEAGCRLVLFTTRAAKSYLDFAYTASDVLLFGRETAGVTDAVVAAADARLA 120
            W++F+ WR  AG RLVL +T+AA  Y  + +  +D+LLFGRE+AGV +A+   AD RL 
Sbjct: 75  DWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERLL 134

Query: 121 IPIRPTMRSLNVAVTAAMAVGEALRQTGS 149
           IP+  + RSLN+AV+ AM  GEALRQ  S
Sbjct: 135 IPMVRSARSLNLAVSVAMTTGEALRQIRS 163


>mlr2718 [J] COG0219 Predicted rRNA methylase (SpoU class) Mlo Mesorhizobium
           loti
          Length = 152

 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 107/148 (72%)

Query: 1   MQIALFQPDIPQNTGTILRLCACLDVSAHIIEPAGFDTSDRNFRRAGMDYLDHVRLKRHD 60
           ++IAL+QPDI  NTGTILR  ACL +   IIEPAGF  SD+  +RAGMDYL+   L RH 
Sbjct: 5   LRIALYQPDIAGNTGTILRFAACLGLGVDIIEPAGFPLSDKALKRAGMDYLEMAALTRHV 64

Query: 61  SWSKFEEWRAEAGCRLVLFTTRAAKSYLDFAYTASDVLLFGRETAGVTDAVVAAADARLA 120
            W+ FE+ R + G RLVL +T+AA  Y +F++   D+LLFGRE+AGV D V  AADARL 
Sbjct: 65  DWNAFEDRRKKDGRRLVLLSTKAATPYTNFSFADGDILLFGRESAGVPDPVHQAADARLT 124

Query: 121 IPIRPTMRSLNVAVTAAMAVGEALRQTG 148
           IP++ + RS+NVA++ AM  GEA+RQ G
Sbjct: 125 IPMQGSARSINVALSVAMVAGEAIRQLG 152


>CC0471 [J] COG0219 Predicted rRNA methylase (SpoU class) Ccr Caulobacter
           vibrioides
          Length = 160

 Score =  154 bits (389), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 95/148 (64%)

Query: 1   MQIALFQPDIPQNTGTILRLCACLDVSAHIIEPAGFDTSDRNFRRAGMDYLDHVRLKRHD 60
           M+IALFQP IPQN G  +RL AC  +   +IEP  F  +D++ +RA +DY     L RHD
Sbjct: 7   MRIALFQPGIPQNVGACIRLTACFGLGLDVIEPCSFPLNDKSLKRAALDYGSLSHLTRHD 66

Query: 61  SWSKFEEWRAEAGCRLVLFTTRAAKSYLDFAYTASDVLLFGRETAGVTDAVVAAADARLA 120
           SW  F +       RL+LFTT+ A  +  F++   D LLFG E+ G  + V AAA  R+ 
Sbjct: 67  SWETFLKAPERVDGRLLLFTTKGATPFHRFSFEPGDTLLFGNESRGAPEEVHAAAHGRIV 126

Query: 121 IPIRPTMRSLNVAVTAAMAVGEALRQTG 148
           IPIRP  RS+N+A TAAMA+GEALRQTG
Sbjct: 127 IPIRPEARSMNLATTAAMALGEALRQTG 154