BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0095.0011.p (677 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc00188 [C] COG1290 Cytochrome b subunit of the bc complex Sme ... 560 e-159 AGc4073 [C] COG1290 Cytochrome b subunit of the bc complex Atu A... 547 e-155 CC0473 [C] COG1290 Cytochrome b subunit of the bc complex Ccr Ca... 545 e-154 mll2706 [C] COG1290 Cytochrome b subunit of the bc complex Mlo M... 530 e-150 BMEI0474 [C] COG1290 Cytochrome b subunit of the bc complex Bme ... 522 e-147 >SMc00188 [C] COG1290 Cytochrome b subunit of the bc complex Sme Sinorhizobium meliloti Length = 426 Score = 560 bits (1443), Expect = e-159, Method: Compositional matrix adjust. Identities = 268/404 (66%), Positives = 324/404 (80%), Gaps = 7/404 (1%) Query: 2 KWIERRLPIFGLIHSSFVAYPTPRNLNYWWTFGAILSMMLALQILTGVILAMHYTPHADL 61 KW++ RLP+ L+H SFV+YP PRNLNY +TFGA+LS+ML +QILTG++LAMHY + Sbjct: 16 KWVDSRLPLPRLVHDSFVSYPVPRNLNYAYTFGAMLSVMLIVQILTGIVLAMHYAAETSV 75 Query: 62 AFKSVELIVRDVNYGWLLRNMHACGASMFFFAVYIHMFRGLYYGSYKEPREVLWILGVII 121 AF SVE I+RDVN+GWLLR +HA GAS FF AVY+H+ RGLYYGSYK PRE+LWILGV+I Sbjct: 76 AFNSVEKIMRDVNHGWLLRYLHANGASFFFIAVYLHIARGLYYGSYKAPREILWILGVVI 135 Query: 122 YLLMMATGFMGYVLPWGQMSFWGATVITNLFSAVPYFGESIVTLLWGGYSVGNPTLNRFF 181 YLLMMATGFMGYVLPWGQMSFWGATVIT FSA P GE I L GG++V PTLNRFF Sbjct: 136 YLLMMATGFMGYVLPWGQMSFWGATVITGFFSAFPLVGEWIQQFLLGGFAVDQPTLNRFF 195 Query: 182 SLHYLLPFVIAGVVVLHVWALHVAGQNNPAGVEAKTEKDTVAFTPYATIKDMFGVSCFLI 241 SLHYLLPF+IAGVVVLH+WALHV GQ NP GVE K++ DTV FTPYAT+KD GVS FLI Sbjct: 196 SLHYLLPFMIAGVVVLHIWALHVTGQTNPTGVEVKSKSDTVPFTPYATLKDALGVSVFLI 255 Query: 242 FFAWFIFYMPNYLGDADNYIPANPGVTPAHIVPEWYYLPFYAILRSIP-------NKLAG 294 +AWF+FYMPN+LG DNYIPA+ TPAHIVPEWYYLPFYA+LR+I +KL G Sbjct: 256 VYAWFVFYMPNFLGHPDNYIPADALKTPAHIVPEWYYLPFYAMLRAITFNVGPIDSKLGG 315 Query: 295 VVAMFSAIIILCFLPWLDSARTRSSKYRPLAKQFFWIFVVVCILLGYLGSQPPEGIYVIA 354 V+ MF +I+IL FLPWLD+++ RS+ YRP K FFWIFV CILLG+LGS+P EG+YV+ Sbjct: 316 VLVMFGSILILFFLPWLDTSKVRSAVYRPWYKLFFWIFVADCILLGWLGSRPAEGLYVVM 375 Query: 355 GRILTVCYFAYFLIVLPLLARIETPRPVPNSIADDVLAKSKGRA 398 ++ T+ YFA+FL+++P+L IETP+ +PNSI + VL K +A Sbjct: 376 SQLGTLYYFAFFLVIMPILGLIETPKRIPNSITEAVLEKQNAKA 419 >AGc4073 [C] COG1290 Cytochrome b subunit of the bc complex Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 427 Score = 547 bits (1410), Expect = e-155, Method: Compositional matrix adjust. Identities = 265/397 (66%), Positives = 320/397 (80%), Gaps = 7/397 (1%) Query: 2 KWIERRLPIFGLIHSSFVAYPTPRNLNYWWTFGAILSMMLALQILTGVILAMHYTPHADL 61 +WI+ RLP+ +I+ SFVAYP PRNLNY +TFGA+L++ML +QILTGV+LAMHY + Sbjct: 15 RWIDSRLPLPRMIYDSFVAYPVPRNLNYAYTFGAMLAVMLIVQILTGVVLAMHYAAETTV 74 Query: 62 AFKSVELIVRDVNYGWLLRNMHACGASMFFFAVYIHMFRGLYYGSYKEPREVLWILGVII 121 AF SVE I+RDVN+GWLLR MHA GAS FF AVY+H+ RGLYYGSYK PRE+LWILG +I Sbjct: 75 AFNSVEKIMRDVNHGWLLRYMHANGASFFFIAVYLHIARGLYYGSYKAPREILWILGCVI 134 Query: 122 YLLMMATGFMGYVLPWGQMSFWGATVITNLFSAVPYFGESIVTLLWGGYSVGNPTLNRFF 181 YLLMMATGFMGYVLPWGQMSFWGATVIT F+A P GE I L GG++V NPTLNRFF Sbjct: 135 YLLMMATGFMGYVLPWGQMSFWGATVITGFFTAFPLVGEWIQQFLLGGFAVDNPTLNRFF 194 Query: 182 SLHYLLPFVIAGVVVLHVWALHVAGQNNPAGVEAKTEKDTVAFTPYATIKDMFGVSCFLI 241 +LHYLLPF+IAGVV+LH+WALHV GQ NP GVE K++ DTV FTPYAT+KD GVS FLI Sbjct: 195 ALHYLLPFMIAGVVILHIWALHVTGQTNPTGVEVKSKTDTVPFTPYATLKDALGVSVFLI 254 Query: 242 FFAWFIFYMPNYLGDADNYIPANPGVTPAHIVPEWYYLPFYAILRSIP-------NKLAG 294 +AWFIFYMPN+LG DNYI A+P TPAHIVPEWYYLPFYA+LR+I +KL G Sbjct: 255 AYAWFIFYMPNFLGHPDNYIMADPLKTPAHIVPEWYYLPFYAMLRAITFNVGPIDSKLGG 314 Query: 295 VVAMFSAIIILCFLPWLDSARTRSSKYRPLAKQFFWIFVVVCILLGYLGSQPPEGIYVIA 354 V+ MF AII+L FLPWLD+++ RS+ YRP K FFW+FVV ILLG+LGS+P EG+YV+ Sbjct: 315 VLVMFGAIIVLFFLPWLDTSKVRSAVYRPWYKMFFWLFVVNAILLGWLGSRPAEGLYVVM 374 Query: 355 GRILTVCYFAYFLIVLPLLARIETPRPVPNSIADDVL 391 +I T+ YF +FL+++P+L +ETPR +PNSI + VL Sbjct: 375 SQIGTLYYFGFFLVIMPILGLVETPRRIPNSITEAVL 411 >CC0473 [C] COG1290 Cytochrome b subunit of the bc complex Ccr Caulobacter vibrioides Length = 426 Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust. Identities = 267/412 (64%), Positives = 317/412 (76%), Gaps = 17/412 (4%) Query: 2 KWIERRLPIFGLIHSSFVAYPTPRNLNYWWTFGAILSMMLALQILTGVILAMHYTPHADL 61 +W++ RLPI L + SFV YPTPRNLNYWWTFG ILS+ LA Q++TG+IL MHYTP AD Sbjct: 15 RWLDARLPIIRLGYDSFVDYPTPRNLNYWWTFGGILSLCLASQLITGIILVMHYTPSADH 74 Query: 62 AFKSVELIVRDVNYGWLLRNMHACGASMFFFAVYIHMFRGLYYGSYKEPREVLWILGVII 121 AF SVE I+RDVNYGWL+R MH+ GASMFF AVYIHM RGLYYGSYK PREVLW+LG +I Sbjct: 75 AFASVEHIMRDVNYGWLIRYMHSNGASMFFIAVYIHMMRGLYYGSYKAPREVLWLLGCVI 134 Query: 122 YLLMMATGFMGYVLPWGQMSFWGATVITNLFSAVPYFGESIVTLLWGGYSVGNPTLNRFF 181 YLLMMAT FMGYVLPWGQMSF GA VITNLF A+P GESI T LWGG++V N TLNRFF Sbjct: 135 YLLMMATAFMGYVLPWGQMSFHGAVVITNLFGALPIVGESITTWLWGGFAVDNATLNRFF 194 Query: 182 SLHYLLPFVIAGVVVLHVWALHVAGQNNPAGVEAKTEKDTVAFTPYATIKDMFGVSCFLI 241 SLHYLLPF+IAGVV+LH+WALHV GQNNP GVE K++ DTV FTPYAT+KD F +S F+I Sbjct: 195 SLHYLLPFMIAGVVILHIWALHVVGQNNPTGVEPKSKADTVPFTPYATVKDGFAMSVFMI 254 Query: 242 FFAWFIFYMPNYLGDADNYIPANPGVTPAHIVPEWYYLPFYAILRSIPNKLAGVVAMFSA 301 FA+F+F+MPN LG DNYI ANP VTPAHIVPEWY+LPFYAILR++P+KL GV+AMF A Sbjct: 255 LFAYFVFFMPNALGHPDNYIEANPLVTPAHIVPEWYFLPFYAILRAVPDKLMGVLAMFGA 314 Query: 302 IIILCFLPWLDSARTRSSKYRPLAKQFFWIFVVVCILLGYLGSQPPE------------- 348 I L LPWLD+++ RS +YRP AK +F IFVV C +LG G++ P+ Sbjct: 315 IGCLFALPWLDTSKVRSMRYRPTAKVYFMIFVVACCILGLCGAKLPDDKVIPHLTTFKLI 374 Query: 349 ----GIYVIAGRILTVCYFAYFLIVLPLLARIETPRPVPNSIADDVLAKSKG 396 +V R+ ++ YFA+FL++LP+L E P PVP SIA L + KG Sbjct: 375 DADLNSFVWLSRVASLYYFAFFLVILPILGLKEKPLPVPESIASPALTEKKG 426 >mll2706 [C] COG1290 Cytochrome b subunit of the bc complex Mlo Mesorhizobium loti Length = 433 Score = 530 bits (1365), Expect = e-150, Method: Compositional matrix adjust. Identities = 272/413 (65%), Positives = 324/413 (78%), Gaps = 7/413 (1%) Query: 2 KWIERRLPIFGLIHSSFVAYPTPRNLNYWWTFGAILSMMLALQILTGVILAMHYTPHADL 61 +W + R+P+ +++ SF+AYP PRNLNY WTFG IL++ML QILTG++LAMHYT +L Sbjct: 16 RWFDARMPLPRMVYDSFIAYPVPRNLNYAWTFGGILAIMLTAQILTGIVLAMHYTADTNL 75 Query: 62 AFKSVELIVRDVNYGWLLRNMHACGASMFFFAVYIHMFRGLYYGSYKEPREVLWILGVII 121 AF SVE I+RDVN GWLLR MHA GAS FF AVYIH+FRGLYYGSYK PRE+LWILG II Sbjct: 76 AFGSVEKIMRDVNSGWLLRYMHANGASFFFIAVYIHIFRGLYYGSYKAPRELLWILGCII 135 Query: 122 YLLMMATGFMGYVLPWGQMSFWGATVITNLFSAVPYFGESIVTLLWGGYSVGNPTLNRFF 181 YLLMMATGFMGYVLPWGQMSFWGATVIT FSA+P G+ I LL GG++V NPTLNRFF Sbjct: 136 YLLMMATGFMGYVLPWGQMSFWGATVITGFFSAIPLIGDWIQQLLLGGFAVDNPTLNRFF 195 Query: 182 SLHYLLPFVIAGVVVLHVWALHVAGQNNPAGVEAKTEKDTVAFTPYATIKDMFGVSCFLI 241 +LHYLLPF+IAGVVVLHVWALHV GQ+NP G+E K++ DTVAFTPYATIKD FG+ FL Sbjct: 196 ALHYLLPFMIAGVVVLHVWALHVVGQSNPTGIEVKSKTDTVAFTPYATIKDAFGMIVFLF 255 Query: 242 FFAWFIFYMPNYLGDADNYIPANPGVTPAHIVPEWYYLPFYAILRSIP-------NKLAG 294 FFA+F+FY+PNYLG DNY ANP TPAHIVPEWY+LPFYAILR+I +KL G Sbjct: 256 FFAYFVFYLPNYLGHPDNYTVANPLKTPAHIVPEWYFLPFYAILRAITFNIGPINSKLGG 315 Query: 295 VVAMFSAIIILCFLPWLDSARTRSSKYRPLAKQFFWIFVVVCILLGYLGSQPPEGIYVIA 354 V+ MF AI +L +PWLD+++ RS+ YRP K FFW+FV ILLG+LGSQP EG YV Sbjct: 316 VLCMFGAIAMLFLVPWLDTSKVRSAVYRPWYKLFFWLFVADAILLGWLGSQPAEGSYVFM 375 Query: 355 GRILTVCYFAYFLIVLPLLARIETPRPVPNSIADDVLAKSKGRAATAASVMLA 407 ++ T+ YFA+FL+ LP+L IETPR +PNSI + VL K+KG + A A Sbjct: 376 AQMATLFYFAFFLVALPVLGLIETPRRLPNSITEAVLEKNKGGSGHPAGATAA 428 >BMEI0474 [C] COG1290 Cytochrome b subunit of the bc complex Bme Brucella melitensis Length = 432 Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust. Identities = 265/407 (65%), Positives = 320/407 (78%), Gaps = 7/407 (1%) Query: 2 KWIERRLPIFGLIHSSFVAYPTPRNLNYWWTFGAILSMMLALQILTGVILAMHYTPHADL 61 KW++ RLP+ L++ SFVAYPTPRNLNY +TFG ILS ML QILTGV+LAMHY L Sbjct: 16 KWVDERLPLPRLVYDSFVAYPTPRNLNYMYTFGGILSFMLIAQILTGVVLAMHYAADTAL 75 Query: 62 AFKSVELIVRDVNYGWLLRNMHACGASMFFFAVYIHMFRGLYYGSYKEPREVLWILGVII 121 AF SVE I+RDVN GWLLR MHA GAS FF AVY+H+ RGLYYGSYK PRE+LWILGV+I Sbjct: 76 AFNSVEKIMRDVNSGWLLRYMHANGASFFFIAVYLHIARGLYYGSYKAPRELLWILGVVI 135 Query: 122 YLLMMATGFMGYVLPWGQMSFWGATVITNLFSAVPYFGESIVTLLWGGYSVGNPTLNRFF 181 +LLMMAT FMGYVLPWGQMSFWGATVIT F+A P GE I LL GG++V NPTLNRFF Sbjct: 136 FLLMMATAFMGYVLPWGQMSFWGATVITGFFTAFPVIGEPIQQLLLGGFAVDNPTLNRFF 195 Query: 182 SLHYLLPFVIAGVVVLHVWALHVAGQNNPAGVEAKTEKDTVAFTPYATIKDMFGVSCFLI 241 SLHYLLPF+IAGVV+LHVWALHV GQ NP G+E K++ DT+ FTPYATIKD FG F + Sbjct: 196 SLHYLLPFMIAGVVILHVWALHVTGQTNPTGIEVKSKTDTLPFTPYATIKDAFGALVFFV 255 Query: 242 FFAWFIFYMPNYLGDADNYIPANPGVTPAHIVPEWYYLPFYAILRSIP-------NKLAG 294 FFA+FIFY+PN+LG DNYIPA+ TPAHIVPEWY+LPFYA+LR+I +KL G Sbjct: 256 FFAYFIFYLPNFLGHPDNYIPADSLKTPAHIVPEWYFLPFYAMLRAITFNIGPIDSKLGG 315 Query: 295 VVAMFSAIIILCFLPWLDSARTRSSKYRPLAKQFFWIFVVVCILLGYLGSQPPEGIYVIA 354 V+ MF +I IL F+PW D+++ RS+ YRP K FFW+FV+ I LG+LGS+P EG YV Sbjct: 316 VLTMFGSIAILFFVPWFDTSKVRSAVYRPWFKLFFWLFVINAIFLGWLGSRPAEGSYVFM 375 Query: 355 GRILTVCYFAYFLIVLPLLARIETPRPVPNSIADDVLAKSKGRAATA 401 ++ T+ YFA+FLI++P++ IETP+ +PNSI + VLAK +G+A A Sbjct: 376 AQMGTLYYFAFFLIIMPVVGLIETPKRLPNSITEAVLAKGEGKAEIA 422