BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0139.p (210 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1455 [TK] COG2197 Response regulator containing a CheY-like r... 167 2e-41 all4635 [TK] COG2197 Response regulator containing a CheY-like r... 166 3e-41 lin2659 [TK] COG2197 Response regulator containing a CheY-like r... 161 9e-40 lin1021 [TK] COG2197 Response regulator containing a CheY-like r... 154 2e-37 BS_yvqC [TK] COG2197 Response regulator containing a CheY-like r... 154 2e-37 >CAC1455 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Cac Clostridium acetobutylicum Length = 225 Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 84/211 (39%), Positives = 131/211 (62%), Gaps = 4/211 (1%) Query: 1 VLIAEDQTLIREGIATLLAQQNDDFEILPGAADGEQAIEFARRYRPDVILMDLQMPRVDG 60 VLIA+DQ LIR+ + +L+ N D EI+ A +G + +E R+Y+PDVILMD++MP +DG Sbjct: 4 VLIADDQELIRQSLKIVLSA-NKDIEIVGTACNGNEVVESVRKYKPDVILMDVRMPEMDG 62 Query: 61 IAATQRILRELPQTHIVVLTTFETNDLIFEAVSAGAKAYLLKDARMEEIASTIRAVINGQ 120 + T+ I P I+VLTTF+ ++ IF A+ GA YLLK M+E+ I V+NG Sbjct: 63 VQCTKVIKESYPNIKIIVLTTFDDDEYIFNALKYGASGYLLKGVSMDELVRAIHTVVNGG 122 Query: 121 SGLSPSVAARILDEFKRLRGPRVSAKLPVR---DGLTARENEILTLIVEGKSNTEIGEQL 177 + ++P + A++ F ++ +S + + D + E I+ + G SN EI ++L Sbjct: 123 AMINPDITAKVFKLFSQMAQGDISIQAGTKKNTDDICDAEWNIIKCVGFGLSNKEIAKKL 182 Query: 178 HLAEGTVKNYVSTILEKCQVKNRTELAIKAI 208 L+EGTV+NY+S IL K ++RT+LAI A+ Sbjct: 183 RLSEGTVRNYLSNILNKLNFRDRTQLAIWAV 213 >all4635 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Nos Nostoc sp. PCC 7120 Length = 219 Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 90/210 (42%), Positives = 135/210 (64%), Gaps = 2/210 (0%) Query: 1 VLIAEDQTLIREGIATLLAQQNDDFEILPGAADGEQAIEFARRYRPDVILMDLQMPRVDG 60 VL+ +DQ LIR+G+ LL + D EI+ A +G+ AI+ ++ PDV+LMD++MP +DG Sbjct: 4 VLLVDDQNLIRQGLRALL-ELEPDIEIVGEAENGKIAIDLIPQFHPDVVLMDMRMPIMDG 62 Query: 61 IAATQRILRELPQTHIVVLTTFETNDLIFEAVSAGAKAYLLKDARMEEIASTIRAVINGQ 120 +AATQ I + P ++VLTTF+ ++ + A+ GA YLLKD EE+A IRAV G Sbjct: 63 VAATQEIQQNFPNVKVLVLTTFDDDEYVKAALQHGAMGYLLKDTPSEELAVAIRAVEKGY 122 Query: 121 SGLSPSVAARILDEFKRLRGPRVSAKLPVRDGLTARENEILTLIVEGKSNTEIGEQLHLA 180 + L P + ++L +F+ A + D LT RE E+L LI G +N EI +QL+++ Sbjct: 123 TQLGPGIVKKLLVQFQSTPNHTPPAPTHLAD-LTPREKEVLRLIAAGANNREIAQQLYIS 181 Query: 181 EGTVKNYVSTILEKCQVKNRTELAIKAITY 210 EGTVKN+V+ IL + +++RT+ AI A TY Sbjct: 182 EGTVKNHVTNILNRLNLRDRTQAAIIANTY 211 >lin2659 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Lin Listeria innocua Length = 228 Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 136/220 (61%), Gaps = 12/220 (5%) Query: 1 VLIAEDQTLIREGIATLLAQQNDDFEILPGAADGEQAIEFARRYRPDVILMDLQMPRVDG 60 ++I +D L REGI +L + D FE++ A +G+ + R Y+PD++LMD+ MP V+G Sbjct: 5 IMIVDDHQLFREGIKRIL-ELEDSFEVVAEAENGKNIVAKVREYKPDIVLMDINMPTVNG 63 Query: 61 IAATQRILRELPQTHIVVLTTFETNDLIFEAVSAGAKAYLLKDARMEEIASTIRAVINGQ 120 + AT+ ++R+ P ++VLT +T++ + EA+ AGA YLLK+ E+ ++ V NG Sbjct: 64 LDATEMLVRQFPSIKVIVLTIHDTDEYVTEALRAGAVGYLLKEMDAHELVEAVKIVDNGG 123 Query: 121 SGLSPSVAARILDEFKRLRGPRVS----------AKLPVRDGLTARENEILTLIVEGKSN 170 + + P VA +++ E++ L S K+P+ LT RE E+L L+ +GKSN Sbjct: 124 AYIHPRVAIKLIREYRHLASTNTSQGVYGYQQPEVKMPLHI-LTHRECEVLQLLTDGKSN 182 Query: 171 TEIGEQLHLAEGTVKNYVSTILEKCQVKNRTELAIKAITY 210 IGE L ++E TVKN+VS+IL+K +V +RT+ + AI + Sbjct: 183 RGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKH 222 >lin1021 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Lin Listeria innocua Length = 212 Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/212 (40%), Positives = 129/212 (60%), Gaps = 11/212 (5%) Query: 1 VLIAEDQTLIREGIATLLAQQNDDFEILPGAADGEQAIEFARRYRPDVILMDLQMPRVDG 60 VL+ +D ++R G++ L+ Q DD E++ A +G + + A RPD+ILMDL M +DG Sbjct: 4 VLLVDDHEMVRIGVSAYLSVQ-DDMEVVGEAENGREGADMALELRPDIILMDLVMDEMDG 62 Query: 61 IAATQRILRELPQTHIVVLTTFETNDLIFEAVSAGAKAYLLKDARMEEIASTIRAVINGQ 120 I AT+ I++ + I+++T+F ++ ++ A+ AGA +Y+LK + EIA IRA G Sbjct: 63 IEATKEIMKNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEIADAIRATYGGD 122 Query: 121 SGLSPSVAARILDEFKRLRGPRVSAK--LPVRDGLTARENEILTLIVEGKSNTEIGEQLH 178 S L P V +++ R++AK + D LT RENEIL LI EGKSN EI ++L Sbjct: 123 SVLEPEVTGKMM--------QRLTAKPEKNLHDDLTNRENEILLLIAEGKSNQEIADELF 174 Query: 179 LAEGTVKNYVSTILEKCQVKNRTELAIKAITY 210 + TVK +VS IL K V++RT+ AI A + Sbjct: 175 ITLKTVKTHVSNILSKLDVQDRTQAAIYAFKH 206 >BS_yvqC [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Bsu Bacillus subtilis Length = 211 Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/207 (43%), Positives = 127/207 (61%), Gaps = 6/207 (2%) Query: 1 VLIAEDQTLIREGIATLLAQQNDDFEILPGAADGEQAIEFARRYRPDVILMDLQMPRVDG 60 VL+ +D ++R G+A L Q D E++ A+DG + + A PDVILMDL M +DG Sbjct: 4 VLLIDDHEMVRMGLAAFLEAQPD-IEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDG 62 Query: 61 IAATQRILRELPQTHIVVLTTFETNDLIFEAVSAGAKAYLLKDARMEEIASTIRAVINGQ 120 I AT++I REL I+VLT+F +D ++ + AGA +YLLK ++ EIA IRA G+ Sbjct: 63 IEATKQICRELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGE 122 Query: 121 SGLSPSVAARILDEFKRLRGPRVSAKLPVRDGLTARENEILTLIVEGKSNTEIGEQLHLA 180 L VA ++L RLR +A LP + LT RE EIL LI EGK+N EIGE+L + Sbjct: 123 PKLESKVAGKVL---SRLRHSGENA-LP-HESLTKRELEILCLIAEGKTNKEIGEELFIT 177 Query: 181 EGTVKNYVSTILEKCQVKNRTELAIKA 207 TVK +++ IL K V +RT+ A+ A Sbjct: 178 IKTVKTHITNILSKLDVSDRTQAAVYA 204