BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0131.p         (235 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3797 [K] COG1309 Transcriptional regulator Bha Bacillus halodu...    63   7e-10

>BH3797 [K] COG1309 Transcriptional regulator Bha Bacillus halodurans
          Length = 202

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 30  RIIGATLTLSNKHGFHATTLRQLAEASGLSMGGLYTYFDSKPTLLSMILGEVAETVAEVL 89
           ++I   ++L  + GFH TT R++A+ SG S+G LY Y  SK  +L ++   + E V++ L
Sbjct: 13  QMIKGAVSLFIEKGFHRTTTREIAKQSGFSIGTLYEYIGSKEDVLYLVCDAIYEEVSDRL 72

Query: 90  NSPPADVKQDARKHLHWIIATHVRMSEAMQPWFVFCFMEAKSFP----PAERQRAIEMEV 145
                D K    + L   IA    + + MQ   +  + EAKS P    P   Q+ ++M  
Sbjct: 73  RQ-QLDTKGSGVERLKKAIAALFHVIDEMQEEVLVMYQEAKSLPKEALPYVLQKEMDMTE 131

Query: 146 MTEKIIAGVLKQG 158
           + E+II   +  G
Sbjct: 132 LMERIIQECVDGG 144