BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0128.p         (119 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll1725 [G] COG1879 ABC-type sugar transport system, periplasmic...    89   2e-18

>mll1725 [G] COG1879 ABC-type sugar transport system, periplasmic component
           Mlo Mesorhizobium loti
          Length = 341

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 70/118 (59%), Gaps = 1/118 (0%)

Query: 1   VLKQNPDLCGIVGFWDGMDIGTAAAVKEAGLTGKVFVATSGGGERKGACELVKSGAFDLN 60
           +L+QNPD+C I+ FWDG   G +AA+++A L GKVF+ T+GGGE+   C+ ++ G +   
Sbjct: 219 MLQQNPDICSIIDFWDGDATGASAAIRDAKLDGKVFLVTTGGGEKAADCDKLQDGTYGAV 278

Query: 61  MSYDVPTQAAQMAGTIKWLLSSGAKAGSIKGSEYTTLIPITKENADSQTACWNLSDLK 118
           +  ++  Q+  M   IK+LL SG  AG+     YT     TK +    + CW+L  L+
Sbjct: 279 VMTELARQSGDMNAIIKFLLQSGQPAGTSHTYIYTLEKATTKADLKPDS-CWDLKALQ 335