BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0127.p (255 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll1724_1 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-ty... 216 3e-56 AGl3486 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 106 6e-23 YPO2499 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 104 2e-22 mlr4968 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 103 5e-22 BMEII0433 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-ty... 102 7e-22 >mll1724_1 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Mlo Mesorhizobium loti Length = 359 Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 113/254 (44%), Positives = 158/254 (62%) Query: 1 MPMRDTLTSLRYRYWPDHLLGEILSKRWTETAIPVILLLIVGFALSRSIDHFLSPSGLAD 60 M R+ L S RY PDHL+GEIL+KRWT+ AIP + L++ I F + L + Sbjct: 1 MSFRERLQSWRYNLVPDHLVGEILTKRWTDNAIPFLALVVTLATFGSIIPGFFKLNALQE 60 Query: 61 TARQAGEIGFIGLGMALVVIVGGIDLSVGSIFALTDFCALYLLDVLNWPVPAVVVATLVC 120 + RQ GE + GM +V++ GGIDLSVGSIFAL+ F A+Y+ +L + + A+L Sbjct: 61 STRQLGEFSMVVTGMTVVMLGGGIDLSVGSIFALSCFSAVYVFFILEQSIWLALAASLAT 120 Query: 121 GALLGAVNGVLIGYLRLRAFITTLITLIIYRSAFDLLIQRYSNSIAAAFPDIPSWNFIGG 180 G + GA+NG L+GYLRLRAF+TTL+T I R+ FD+L+ Y+ + + +FIG Sbjct: 121 GLIFGAINGYLVGYLRLRAFLTTLVTFIFGRALFDILVTTYAADVQLSTATSDVLDFIGD 180 Query: 181 GDVFGIPSVALVYIAIAIFGHIFMTRLRPGWHITAIGGSRRSAYNSGIPVRRTIALCYVA 240 +G+ + I +AI HI +TR RPGWH+ A+GGSRRSA+N+GI VRRT+ + YV Sbjct: 181 STFWGLSVSVWLAIILAIVTHIALTRSRPGWHVLAVGGSRRSAHNAGIRVRRTVFMTYVF 240 Query: 241 SGVLTSIAALFXSC 254 SG SI +C Sbjct: 241 SGFCASIGGFLIAC 254 >AGl3486 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 334 Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 126/245 (51%), Gaps = 12/245 (4%) Query: 15 WPDHLLGEILSKRWTETAIPVILLLIVGFAL-----SRSIDHFLSPSGLADTARQAGEIG 69 + + G LS + E A +L + FAL S + D FL+ L + RQA I Sbjct: 4 YTERAKGSPLSDFFAENA--QVLSIAAFFALCMVFFSVTTDTFLTAGNLLNVVRQAAPIL 61 Query: 70 FIGLGMALVVIVGGIDLSVGSIFALTDFCALYLLDVLNWPVPAVVVATLVCGALLGAVNG 129 + + M V+I GGIDLSVGS+ AL + LL +P P VVVA LV G LG V G Sbjct: 62 IVSVAMTFVIITGGIDLSVGSMVALINAVGAILLAA-GYPWPLVVVAMLVLGGGLGLVQG 120 Query: 130 VLIGYLRLRAFITTLITLIIYRSAFDLLIQRYSNSIAAAFPDIPSWNFIGGGDVFGIPSV 189 I Y + AFI TL L I R + Q YS I PD P + ++G GD G+P Sbjct: 121 WFIAYQGIPAFIVTLAGLSILRGVALYITQGYSVPI----PDAPGFFYLGRGDFLGMPVP 176 Query: 190 ALVYIAIAIFGHIFMTRLRPGWHITAIGGSRRSAYNSGIPVRRTIALCYVASGVLTSIAA 249 AL+ + + + +I ++ R G + A+G + +A G+P + +A Y+A+GV ++IA Sbjct: 177 ALIGVVVTVIAYIVLSSTRYGRRVVAVGSNPEAARRVGMPAKWILASVYLAAGVASAIAG 236 Query: 250 LFXSC 254 L + Sbjct: 237 LMIAA 241 >YPO2499 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Ype Yersinia pestis Length = 330 Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 116/230 (50%), Gaps = 11/230 (4%) Query: 26 KRWTETAIPVILLLIVGFA-----LSRSIDHFLSPSGLADTARQAGEIGFIGLGMALVVI 80 KRW + +L +GF +S D FL+ + L + ARQ I +GM ++ Sbjct: 21 KRWEKLLHHPAMLPFIGFVVLFVLMSGLNDSFLTVNNLTNVARQVSINAIIAVGMTCAIL 80 Query: 81 VGGIDLSVGSIFALTDFCALYLLDVLNWPVPAVVVATLVCGALLGAVNGVLIGYLRLRAF 140 GGIDLSVG + AL+ A L+ + P+P ++A L+ GAL G NG I YLR+ Sbjct: 81 TGGIDLSVGPVMALSGSIAAGLM-LAGIPIPLAMMAALLVGALFGLANGSCIAYLRMPPI 139 Query: 141 ITTLITLIIYRSAFDLLIQRYSNSIAAAFPDIPSWNFIGGGDVFGIPSVALVYIAIAIFG 200 I TL ++ I R L Y S PD+ ++F G G V GI L+ + +F Sbjct: 140 IVTLASMGIARGLALLYTGGYPIS---GLPDM--FSFFGRGTVLGIQVPILIMAGVYLFA 194 Query: 201 HIFMTRLRPGWHITAIGGSRRSAYNSGIPVRRTIALCYVASGVLTSIAAL 250 I + L G +I AIGG+ +A SGI V R L YV SG+ ++A L Sbjct: 195 WIMLNHLSFGRYIYAIGGNEEAARLSGIRVSRYKMLVYVVSGLTAALAGL 244 >mlr4968 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Mlo Mesorhizobium loti Length = 348 Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 17/209 (8%) Query: 51 HFLSPSGLADTARQAGEIGFIGLGMALVVIVGGIDLSVGSIFAL-----TDFCALYLLDV 105 FL P LA+T+ G G + +G A V+I GGI+LSVGS+ AL DF A+ LD Sbjct: 42 RFLLPINLANTSNLIGLFGILSIGQAFVIITGGIELSVGSVVALLGTLFIDFIAVRELD- 100 Query: 106 LNWPVPAVVVATLVCGALLGAVNGVLIGYLRLRAFITTLITLIIYRSAFDLLIQRYSNSI 165 WP+ V++ L GA++G V+G LI L+L+ F+ TL L+IYR + + Y+ Sbjct: 101 --WPLAFVLIIAL--GAIIGLVHGWLITRLKLQPFVVTLCGLLIYRG----VARFYTADG 152 Query: 166 AAAF---PDIPSWNFIGGGDVFGIPSVALVYIAIAIFGHIFMTRLRPGWHITAIGGSRRS 222 A F + P F+ G +G+P+ + I IAI + + R G ++ AIG + + Sbjct: 153 TAGFAFGQNFPELEFLTAGRSYGVPNSFIALIVIAIVMWVVLHRSVFGRYLYAIGKNEEA 212 Query: 223 AYNSGIPVRRTIALCYVASGVLTSIAALF 251 A SGI R + YV GVLT+++A++ Sbjct: 213 AKYSGIRTGRIVMAAYVICGVLTALSAIY 241 >BMEII0433 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bme Brucella melitensis Length = 346 Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 112/219 (51%), Gaps = 17/219 (7%) Query: 48 SIDHFLSPSGLADTARQAGEIGFIGLGMALVVIVGGIDLSVGSIFALTDFCALYLLD--- 104 ++D+FL S G + +GM LV++ GGIDLSVGS L A +L+ Sbjct: 51 TVDNFLIMS------SHVAIFGLLAIGMLLVILNGGIDLSVGSTLGLAGVVAGFLMQGVT 104 Query: 105 ------VLNWPVPAVVVATLVCGALLGAVNGVLIGYLRLRAFITTLITLIIYRSAFDLLI 158 +L +PV AVV+ T GA +GAVNGVLI YLR+ AF+ TL L R L+ Sbjct: 105 LQEFGIILYFPVWAVVLITCALGAFVGAVNGVLIAYLRVPAFVATLGVLYCARGVALLMT 164 Query: 159 QRYSNSIAAAFPDIPSWNF--IGGGDVFGIPSVALVYIAIAIFGHIFMTRLRPGWHITAI 216 + + P++ + F +G +FG+P LV +AI I + R G + A Sbjct: 165 NGLTYNNLGGRPELGNTGFDWLGFNKLFGVPIGVLVLAILAIICAIVLNRTAFGRWLYAS 224 Query: 217 GGSRRSAYNSGIPVRRTIALCYVASGVLTSIAALFXSCS 255 GG+ R+A SG+PV+R YV SG+ +IA L S Sbjct: 225 GGNERAAELSGVPVKRVKVSVYVISGICAAIAGLVLSSQ 263