BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0123.p         (124 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3178 Non COG                                                         59   4e-09

>PA3178 Non COG
          Length = 125

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 6/117 (5%)

Query: 6   VVACMVWCALILGAPGATVHAQTPSNCKEPQTGTSRVPMLSPPLANVVTGTGRLQFYSAP 65
           +  CM+W    L A  A + AQ+ ++  E   G        PPL   V   GR  F+SAP
Sbjct: 7   IALCMLWSVAGLAA-DAAMPAQSCASLGEATAGPED--NFRPPLEGEVIDKGRAYFHSAP 63

Query: 66  NLHCPIRGVFVIPNDALIAYAQTRDGWSSVMYLNPGTGNDVSGWVRSARLKVTGTVG 122
              C + GVFVIP D +  Y  + + W +VMY+    G + SGW+   R+++    G
Sbjct: 64  RADC-VTGVFVIPGDFITVYKPSGE-WLNVMYVA-RDGKETSGWLLEKRVRLRQAFG 117