BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0117.p (200 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ECs0284 [L] COG1961 Site-specific recombinases, DNA invertase Pi... 100 1e-21 ZpinH [L] COG1961 Site-specific recombinases, DNA invertase Pin ... 100 1e-21 pin [L] COG1961 Site-specific recombinases, DNA invertase Pin ho... 99 4e-21 TVN1478 [L] COG1961 Site-specific recombinases, DNA invertase Pi... 97 3e-20 STM2702 [L] COG1961 Site-specific recombinases, DNA invertase Pi... 96 5e-20 >ECs0284 [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs Ecs Escherichia coli O157:H7 Length = 184 Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 101/184 (54%), Gaps = 12/184 (6%) Query: 7 YLRVSTDSQTTLNQRLELEAVAKRSGWEIVGVYEDAGISGAKGRDKRPGFDRLLKDATAR 66 Y+RVST+ Q T QR L +G E++ +ED ISG K +RPG +LL+ +A Sbjct: 5 YVRVSTNDQNTDLQRNALNC----AGCELI--FEDK-ISGTK--SERPGLKKLLRTLSAG 55 Query: 67 KVDMIAAWSVDRLGRSLQDLVGFLTELQALRCDLYLHQQALDTSTPSGRAMFQMLGVFAE 126 D + W +DRLGRS++ LV + EL+ + A+DTSTP GR F ++G AE Sbjct: 56 --DTLVVWKLDRLGRSMRHLVILVEELRERGVNFRSLTDAIDTSTPMGRFFFHVMGALAE 113 Query: 127 FERGMIRERVNAGLARARARGVKLGRRP-VKPAVEARIRALKAEGMGILKIGKTLSVGTS 185 ER +I ER AGL ARA+G GRRP + P A+ L A G+ K+ VG S Sbjct: 114 MERELIVERTKAGLEAARAQGRIGGRRPKLTPEQWAQAGRLIAAGIPRQKVAIIYDVGVS 173 Query: 186 VVQR 189 + + Sbjct: 174 TLYK 177 >ZpinH [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs EcZ Escherichia coli O157:H7 EDL933 Length = 196 Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 101/184 (54%), Gaps = 12/184 (6%) Query: 7 YLRVSTDSQTTLNQRLELEAVAKRSGWEIVGVYEDAGISGAKGRDKRPGFDRLLKDATAR 66 Y+RVST+ Q T QR L +G E++ +ED ISG K +RPG +LL+ +A Sbjct: 17 YVRVSTNDQNTDLQRNALNC----AGCELI--FEDK-ISGTK--SERPGLKKLLRTLSAG 67 Query: 67 KVDMIAAWSVDRLGRSLQDLVGFLTELQALRCDLYLHQQALDTSTPSGRAMFQMLGVFAE 126 D + W +DRLGRS++ LV + EL+ + A+DTSTP GR F ++G AE Sbjct: 68 --DTLVVWKLDRLGRSMRHLVILVEELRERGVNFRSLTDAIDTSTPMGRFFFHVMGALAE 125 Query: 127 FERGMIRERVNAGLARARARGVKLGRRP-VKPAVEARIRALKAEGMGILKIGKTLSVGTS 185 ER +I ER AGL ARA+G GRRP + P A+ L A G+ K+ VG S Sbjct: 126 MERELIVERTKAGLEAARAQGRIGGRRPKLTPEQWAQAGRLIAAGIPRQKVAIIYDVGVS 185 Query: 186 VVQR 189 + + Sbjct: 186 TLYK 189 >pin [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs Eco Escherichia coli K12 Length = 184 Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 100/184 (54%), Gaps = 12/184 (6%) Query: 7 YLRVSTDSQTTLNQRLELEAVAKRSGWEIVGVYEDAGISGAKGRDKRPGFDRLLKDATAR 66 Y+RVST+ Q T QR L +G E++ +ED ISG K +RPG +LL+ +A Sbjct: 5 YVRVSTNDQNTDLQRNALNC----AGCELI--FEDK-ISGTK--SERPGLKKLLRTLSAG 55 Query: 67 KVDMIAAWSVDRLGRSLQDLVGFLTELQALRCDLYLHQQALDTSTPSGRAMFQMLGVFAE 126 D + W +DRLGRS++ LV + EL+ + ++DTSTP GR F ++G AE Sbjct: 56 --DTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTPMGRFFFHVMGALAE 113 Query: 127 FERGMIRERVNAGLARARARGVKLGRRP-VKPAVEARIRALKAEGMGILKIGKTLSVGTS 185 ER +I ER AGL ARA+G GRRP + P A+ L A G K+ VG S Sbjct: 114 MERELIVERTKAGLETARAQGRIGGRRPKLTPEQWAQAGRLIAAGTPRQKVAIIYDVGVS 173 Query: 186 VVQR 189 + + Sbjct: 174 TLYK 177 >TVN1478 [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs Tvo Thermoplasma volcanium Length = 201 Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 14/196 (7%) Query: 7 YLRVSTDSQ----TTLNQRLELEAVAKRSGWEIVGVYEDAGISGAKGRDKRPGFDRLLKD 62 Y+R ST + + Q+ + + G+E+ ++ED SG RP F+R+LK Sbjct: 7 YVRASTIEEVRQGSNERQKEAIRQYTYQKGYEL-EIFEDKAKSGRN--TLRPEFERMLK- 62 Query: 63 ATARKVDMIAAWSVDRLGRSLQDLVGFLTEL-QALRCDLYLHQQALDTSTPSGRAMFQML 121 + R+ ++ +DR RSL DL+ L L Q + ++ +DT+TP+GR + Q+L Sbjct: 63 SLDRRPQIVIVSKIDRFARSLSDLLKTLEYLDQNGVGFVSVNDPGIDTTTPNGRLLLQIL 122 Query: 122 GVFAEFERGMIRERVNAGLARARARGVKLGRRPVKPAVEA-----RIRALKAEGMGILKI 176 G FAEFER MI R AG +A+++GVK GR P+K + ++ LK +G+ I Sbjct: 123 GAFAEFERNMINSRTKAGREQAQSKGVKFGRPPLKTRNGSFIDRRKVMELKQKGLSARAI 182 Query: 177 GKTLSVGTSVVQRVLQ 192 K+L T+ + R+L+ Sbjct: 183 AKSLECSTTPILRILR 198 >STM2702 [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs Sty Salmonella typhimurium LT2 Length = 185 Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 73/191 (38%), Positives = 102/191 (53%), Gaps = 13/191 (6%) Query: 7 YLRVSTDSQTTLNQRLELEAVAKRSGWEIVGVYEDAGISGAKGRDKRPGFDRLLKDATAR 66 Y+RVST+ Q T QR L +G E++ +ED ISG K +RPG +LL+ T Sbjct: 5 YVRVSTNDQNTDLQRNALNC----AGCELI--FEDK-ISGTK--SERPGLKKLLR--TLS 53 Query: 67 KVDMIAAWSVDRLGRSLQDLVGFLTELQALRCDLYLHQQALDTSTPSGRAMFQMLGVFAE 126 + D + W +DRLGRS++ LV + EL+ + ++DTST GR F ++G AE Sbjct: 54 EGDTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTSMGRFFFHIMGALAE 113 Query: 127 FERGMIRERVNAGLARARARGVKLGRRP-VKPAVEARIRALKAEGMGILKIGKTLSVGTS 185 ER +I ER AGLA ARA+G GRRP + P + L A G ++G V S Sbjct: 114 MERELIVERTRAGLAAARAQGRVGGRRPKLTPEQWEQAGRLLAAGETRHRVGLLFDVSIS 173 Query: 186 VVQRVLQPVAQ 196 + + PV Q Sbjct: 174 TLYKKF-PVNQ 183