BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0094.0098.p         (44 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI0276 [J] COG0230 Ribosomal protein L34 Bme Brucella melitensis     77   1e-14
SMc04434 [J] COG0230 Ribosomal protein L34 Sme Sinorhizobium mel...    76   2e-14
msr4809 [J] COG0230 Ribosomal protein L34 Mlo Mesorhizobium loti       72   2e-13
VC0007 [J] COG0230 Ribosomal protein L34 Vch Vibrio cholerae           65   5e-11
RP610 [J] COG0230 Ribosomal protein L34 Rpr Rickettsia prowazekii      62   2e-10

>BMEI0276 [J] COG0230 Ribosomal protein L34 Bme Brucella melitensis
          Length = 44

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/44 (88%), Positives = 42/44 (95%)

Query: 1  VKRTYQPSKLVRKRRHGFRARLATAGGRKVLAARRARGRKRLSA 44
          +KRTYQPSK+VRKRRHGFRAR+AT GGRKVLAARR RGRKRLSA
Sbjct: 1  MKRTYQPSKIVRKRRHGFRARMATTGGRKVLAARRTRGRKRLSA 44


>SMc04434 [J] COG0230 Ribosomal protein L34 Sme Sinorhizobium meliloti
          Length = 44

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/44 (88%), Positives = 42/44 (95%)

Query: 1  VKRTYQPSKLVRKRRHGFRARLATAGGRKVLAARRARGRKRLSA 44
          +KRTYQPSKLVRKRRHGFRAR++T GGRKVL ARRARGRKRLSA
Sbjct: 1  MKRTYQPSKLVRKRRHGFRARMSTKGGRKVLTARRARGRKRLSA 44


>msr4809 [J] COG0230 Ribosomal protein L34 Mlo Mesorhizobium loti
          Length = 44

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/44 (86%), Positives = 41/44 (93%)

Query: 1  VKRTYQPSKLVRKRRHGFRARLATAGGRKVLAARRARGRKRLSA 44
          +KRTYQPSKLVRKRRHGFRAR+AT GGR V+AARR RGRKRLSA
Sbjct: 1  MKRTYQPSKLVRKRRHGFRARMATKGGRGVVAARRNRGRKRLSA 44


>VC0007 [J] COG0230 Ribosomal protein L34 Vch Vibrio cholerae
          Length = 45

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/42 (80%), Positives = 37/42 (88%)

Query: 2  KRTYQPSKLVRKRRHGFRARLATAGGRKVLAARRARGRKRLS 43
          KRT+QPS L RKR HGFRAR+ATA GRKVL ARRA+GRKRLS
Sbjct: 3  KRTFQPSVLKRKRTHGFRARMATANGRKVLNARRAKGRKRLS 44


>RP610 [J] COG0230 Ribosomal protein L34 Rpr Rickettsia prowazekii
          Length = 44

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 37/44 (84%)

Query: 1  VKRTYQPSKLVRKRRHGFRARLATAGGRKVLAARRARGRKRLSA 44
          +KRT+QPS LVRKRRHGFRAR+ TA GR +L  RRA+GR +LSA
Sbjct: 1  MKRTFQPSNLVRKRRHGFRARMITATGRAILKKRRAKGRHKLSA 44