BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0087.p (311 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0265 [J] COG0223 Methionyl-tRNA formyltransferase Bme Bruce... 380 e-105 AGc642 [J] COG0223 Methionyl-tRNA formyltransferase Atu Agrobact... 370 e-102 SMc01100 [J] COG0223 Methionyl-tRNA formyltransferase Sme Sinorh... 366 e-101 mll4854 [J] COG0223 Methionyl-tRNA formyltransferase Mlo Mesorhi... 349 4e-96 CC0279 [J] COG0223 Methionyl-tRNA formyltransferase Ccr Caulobac... 333 4e-91 >BMEII0265 [J] COG0223 Methionyl-tRNA formyltransferase Bme Brucella melitensis Length = 306 Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust. Identities = 182/299 (60%), Positives = 232/299 (77%) Query: 3 LRLIFMGTPDFAVPTLLELVAHGHEVVAVYTRAPKPGGRRGLQLQPTPVEQEARRLGIPV 62 +R++FMGTP+F+VP L ++ HG+EVVA YT+ P+P GRRGL+L +PV ++A + GIPV Sbjct: 1 MRVVFMGTPEFSVPILTAIIGHGYEVVAAYTQPPRPAGRRGLELTRSPVHEKAEQFGIPV 60 Query: 63 LTPKTLKTPEALEEFRTHDADAAVVVAYGMILPQAILDAPRLGCFNLHASLLPRWRGAAP 122 TPK+LK E + F + +AD A+VVAYG++LP+AILDAPRLGC+N HASLLPRWRGAAP Sbjct: 61 FTPKSLKGAEEQDVFASLEADVAIVVAYGLLLPKAILDAPRLGCYNGHASLLPRWRGAAP 120 Query: 123 INRAIMAGDAESGVMVMKMDVGLDTGDVAMAERLPISDSMTASDLHDALAPLGADLMVRA 182 I RAIMAGDAE+G+M+MKMD GLDTG VAMAE++ I+ MTA +LHD L+ +GADLM+RA Sbjct: 121 IQRAIMAGDAETGMMIMKMDEGLDTGPVAMAEKVAITPDMTAGELHDRLSMIGADLMIRA 180 Query: 183 MAALGRGGLQLTKQSADGVTYAAKIEKAEARIDWTQPAHAVLRHIHGLSPFPGAWCELTG 242 + AL R L L Q+ +GVTYAAKI+KAEARIDW++PA V I GLSPFPGAWCE+ Sbjct: 181 LGALERESLALQPQAEEGVTYAAKIDKAEARIDWSKPAKDVHNSIRGLSPFPGAWCEMEI 240 Query: 243 EGEPVRLKILRCELAKRSGVPGDVLDDNFAIACGDGAIRILELQRAGKAPMKAADFLRG 301 G R+K+ R L + SG PG VLDD IACG+GA+R+ LQR+G P+ A +FLRG Sbjct: 241 NGAVERVKLQRSTLGEGSGAPGTVLDDRLTIACGEGAVRLATLQRSGGKPLPAQEFLRG 299 >AGc642 [J] COG0223 Methionyl-tRNA formyltransferase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 311 Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/311 (60%), Positives = 227/311 (72%) Query: 1 MPLRLIFMGTPDFAVPTLLELVAHGHEVVAVYTRAPKPGGRRGLQLQPTPVEQEARRLGI 60 M LR+IFMGTPDF+VPTL LV GHE+VAVYT+ P+PGGRRGL LQ +PV Q A LG+ Sbjct: 1 MSLRIIFMGTPDFSVPTLRALVEAGHEIVAVYTQPPRPGGRRGLDLQKSPVHQVAELLGL 60 Query: 61 PVLTPKTLKTPEALEEFRTHDADAAVVVAYGMILPQAILDAPRLGCFNLHASLLPRWRGA 120 PVLTP K E ++FR +AD AVVVAYG++LP+AIL RLGC+N HASLLPRWRGA Sbjct: 61 PVLTPVNFKAEEDRQQFRDFNADVAVVVAYGLLLPEAILSGTRLGCYNGHASLLPRWRGA 120 Query: 121 APINRAIMAGDAESGVMVMKMDVGLDTGDVAMAERLPISDSMTASDLHDALAPLGADLMV 180 API RAIMAGDAE+G+MVMKM+ GLDTG VA+ ++ I ++MTA +LHD+L GA LM Sbjct: 121 APIQRAIMAGDAETGMMVMKMEKGLDTGPVALTAKVAIDENMTAGELHDSLMLAGARLMR 180 Query: 181 RAMAALGRGGLQLTKQSADGVTYAAKIEKAEARIDWTQPAHAVLRHIHGLSPFPGAWCEL 240 +AMA L L L Q+ +GV YAAKI+K E RID+++PA V HI GLSPFPGAW E+ Sbjct: 181 QAMAKLEADDLPLVTQAEEGVLYAAKIDKGETRIDFSRPAQDVHNHIRGLSPFPGAWLEM 240 Query: 241 TGEGEPVRLKILRCELAKRSGVPGDVLDDNFAIACGDGAIRILELQRAGKAPMKAADFLR 300 G+P R+K+L ELA G G LDD IACG A+R+ LQ+AG PM AADF+R Sbjct: 241 DIGGKPERVKVLASELASGMGEAGSALDDALTIACGSDAVRLTRLQKAGGKPMSAADFVR 300 Query: 301 GTPLKPPARLG 311 GTP+ RLG Sbjct: 301 GTPVPATTRLG 311 >SMc01100 [J] COG0223 Methionyl-tRNA formyltransferase Sme Sinorhizobium meliloti Length = 311 Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/310 (60%), Positives = 222/310 (71%) Query: 1 MPLRLIFMGTPDFAVPTLLELVAHGHEVVAVYTRAPKPGGRRGLQLQPTPVEQEARRLGI 60 MPLR+IFMGTP+F+VPTLL L GHE+ AVYT+ P+PGGRRGL LQ +PV Q A RLGI Sbjct: 1 MPLRMIFMGTPEFSVPTLLALAGAGHEIAAVYTQPPRPGGRRGLDLQKSPVHQAAERLGI 60 Query: 61 PVLTPKTLKTPEALEEFRTHDADAAVVVAYGMILPQAILDAPRLGCFNLHASLLPRWRGA 120 PVLTP K + FR AD AVVVAYG++LP+ IL R GC+N HASLLPRWRGA Sbjct: 61 PVLTPANFKDAADRQTFRDFGADVAVVVAYGLLLPEEILSGTRYGCYNGHASLLPRWRGA 120 Query: 121 APINRAIMAGDAESGVMVMKMDVGLDTGDVAMAERLPISDSMTASDLHDALAPLGADLMV 180 API RAIMAGD E+G+MVMKMD GLDTG VA+A+ +PI M A +LHD L +GA LM Sbjct: 121 APIQRAIMAGDRETGMMVMKMDKGLDTGPVALAQSVPIDGMMRAGELHDRLMQVGAVLMT 180 Query: 181 RAMAALGRGGLQLTKQSADGVTYAAKIEKAEARIDWTQPAHAVLRHIHGLSPFPGAWCEL 240 AMA L G L L Q+ +GV YAAKI K E RID+++PA V HI GLSPFPGAW EL Sbjct: 181 EAMARLESGELPLAPQAQEGVAYAAKISKEETRIDFSRPAAEVHNHIRGLSPFPGAWFEL 240 Query: 241 TGEGEPVRLKILRCELAKRSGVPGDVLDDNFAIACGDGAIRILELQRAGKAPMKAADFLR 300 G R+K+L E+++ G PG+VLD IACG+GA+R+ LQRAG + AADFLR Sbjct: 241 DIAGRRERVKVLASEMSEGEGDPGEVLDHTLGIACGEGAVRLTRLQRAGGKALAAADFLR 300 Query: 301 GTPLKPPARL 310 GTP+ AR+ Sbjct: 301 GTPIAAGARI 310 >mll4854 [J] COG0223 Methionyl-tRNA formyltransferase Mlo Mesorhizobium loti Length = 317 Score = 349 bits (896), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 178/310 (57%), Positives = 220/310 (70%), Gaps = 6/310 (1%) Query: 1 MPLRLIFMGTPDFAVPTLLELVAHGHEVVAVYTRAPKPGGRRGLQLQPTPVEQEARRLGI 60 MPLR+IFMGTP+F+VPTL + GHE+ AVYT+ P+ GRRGL+L P+PV++EA RLGI Sbjct: 1 MPLRVIFMGTPEFSVPTLRAIAKAGHEISAVYTQPPRAAGRRGLELTPSPVQREAERLGI 60 Query: 61 PVLTPKTLKTPEALEEFRTHDADAAVVVAYGMILPQAILDAPRLGCFNLHASLLPRWRGA 120 V TP +LK F AD AVVVAYG++LP+ ILDAPRLGC N HASLLPRWRGA Sbjct: 61 EVRTPTSLKGEAEQAAFNALRADIAVVVAYGLLLPKVILDAPRLGCINGHASLLPRWRGA 120 Query: 121 APINRAIMAGDAESGVMVMKMDVGLDTGDVAMAERLPISDSMTASDLHDALAPLGADLMV 180 API RAIMAGD ESG+MVM+M+ GLDTG V + E+ I MTA DLHD L +GA LMV Sbjct: 121 APIQRAIMAGDLESGMMVMRMEEGLDTGPVGLLEKCAIDPDMTAGDLHDRLMRVGAALMV 180 Query: 181 RAMAALGRGGLQLTKQSADGVTYAAKIEKAEARIDWTQPAHAVLRHIHGLSPFPGAWCEL 240 A+A L + L T Q+A+GVTYA KI+K+E R+DWT+PA V H+ GLSPFPGAW E+ Sbjct: 181 EALARLAKNTLTFTAQAAEGVTYARKIDKSETRVDWTRPAAEVHNHLRGLSPFPGAWSEI 240 Query: 241 TGEGEPVRLKILRCEL------AKRSGVPGDVLDDNFAIACGDGAIRILELQRAGKAPMK 294 G RLK+LR L ++ G G +LDD +ACG GAIR++E+QRAG P Sbjct: 241 DIGGRMERLKLLRSTLSDGLSPSEDLGESGGILDDRLTVACGAGAIRLVEVQRAGGKPAA 300 Query: 295 AADFLRGTPL 304 A++FLRG + Sbjct: 301 ASEFLRGAKI 310 >CC0279 [J] COG0223 Methionyl-tRNA formyltransferase Ccr Caulobacter vibrioides Length = 308 Score = 333 bits (853), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 172/302 (56%), Positives = 215/302 (71%), Gaps = 1/302 (0%) Query: 3 LRLIFMGTPDFAVPTLLELVAHGHEVVAVYTRAPKPGGRRGLQLQPTPVEQEARRLGIPV 62 +R+ F+GTPDFAV L ELVA GHE+V VY++ P P GR G L+P+PV A LG+PV Sbjct: 1 MRIAFLGTPDFAVTCLAELVASGHEIVCVYSQPPAPRGR-GQDLKPSPVHAFAEGLGLPV 59 Query: 63 LTPKTLKTPEALEEFRTHDADAAVVVAYGMILPQAILDAPRLGCFNLHASLLPRWRGAAP 122 TP ++KTPE + F+ D DAAVVVA+G IL + +L+AP+ GCFNLHASLLPRWRGAAP Sbjct: 60 RTPVSMKTPEEIAAFQALDLDAAVVVAFGQILVKDVLEAPKHGCFNLHASLLPRWRGAAP 119 Query: 123 INRAIMAGDAESGVMVMKMDVGLDTGDVAMAERLPISDSMTASDLHDALAPLGADLMVRA 182 I RAIMAGDA +GV VM+M GLD G + M++++ I+D TA+ LHD LA +GA L+ A Sbjct: 120 IQRAIMAGDAVTGVQVMRMSEGLDEGPILMSQQVAIADDDTAASLHDKLAAVGARLLPVA 179 Query: 183 MAALGRGGLQLTKQSADGVTYAAKIEKAEARIDWTQPAHAVLRHIHGLSPFPGAWCELTG 242 +AA+ R +Q T Q+ DGVTYA KI+ AEARIDWT+PA + RHI GLSPFPGAW E Sbjct: 180 LAAIEREVVQETPQAEDGVTYAKKIKSAEARIDWTRPAAEIDRHIRGLSPFPGAWFEAPS 239 Query: 243 EGEPVRLKILRCELAKRSGVPGDVLDDNFAIACGDGAIRILELQRAGKAPMKAADFLRGT 302 E PVR+K L + SGV G LDD IACG+G+IR+L+ QR GK A F RG Sbjct: 240 EKGPVRVKALLSRVEAASGVAGTTLDDALLIACGEGSIRLLKAQREGKGVQDAQTFTRGF 299 Query: 303 PL 304 P+ Sbjct: 300 PI 301