BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0077.p (315 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc4560 [G] COG0524 Sugar kinases, ribokinase family Atu Agrobac... 159 6e-39 yihV [G] COG0524 Sugar kinases, ribokinase family Eco Escherichi... 141 2e-33 STM4024 [G] COG0524 Sugar kinases, ribokinase family Sty Salmone... 137 4e-32 ZyihV [G] COG0524 Sugar kinases, ribokinase family EcZ Escherich... 137 5e-32 ECs4806 [G] COG0524 Sugar kinases, ribokinase family Ecs Escheri... 137 5e-32 >AGc4560 [G] COG0524 Sugar kinases, ribokinase family Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 319 Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 163/304 (53%), Gaps = 16/304 (5%) Query: 14 ILCIGLPVRDLTFRVS-VPARGSKENATHFDEICGGNALNAAIGIVRLGGRASICGPMGD 72 +LC+G V D FRV+ +P K +I G A +AA + R+GGRAS+ G +GD Sbjct: 10 VLCVGAAVLDTLFRVADMPKGEGKVLPYEVLQIAEGMASSAAYAVHRMGGRASLWGAVGD 69 Query: 73 SQETSSRYIFDKLAQEGIETNHLIHMPNLVTPISAIMIDDSGERTIVTFRDPELWKVK-- 130 ET +R + D L++ GI+T+ + P + +S I+ID+ GER IV F D L + K Sbjct: 70 -DETGTRILRD-LSESGIDTSGMTVAPGARSALSTIIIDNRGERLIVPFYDHRLHEKKRA 127 Query: 131 LPPTELLLEDCAAILTESRCAPFCTELCAEAVKRGIPVVVDVDRA-MSMREGLLTASSHL 189 P ++ L D A+L + R ++ A G P ++D D A + EGL A++H+ Sbjct: 128 CTPEDIALFD--AVLVDVRWPELALDVLTVARALGKPAILDGDVAPVETLEGLAPAATHI 185 Query: 190 VFSSEP----LQETADVTDDGQALHKLAKLTPSFLAGTRGPMGTIWLN-ENGELEETPAF 244 VFS EP L V D LH A+ +F+A T GP G W ++ + Sbjct: 186 VFS-EPAATRLTGLETVKDMLPVLH--ARYPQTFIAVTAGPAGCWWTEADDPTVHFQTTM 242 Query: 245 PVHTVDTLGAGDVFHGAFALAITEKQPLRDALRFASAAAALKCTRFGGAYAAPQRTEVEE 304 V VDTL AGD+FHG FALA+ E R A+R +S AAALKCT FGG AP R E EE Sbjct: 243 QVEAVDTLAAGDIFHGTFALAMAEGMQSRAAVRLSSVAAALKCTVFGGRIGAPTREETEE 302 Query: 305 FLGQ 308 + Q Sbjct: 303 AMRQ 306 >yihV [G] COG0524 Sugar kinases, ribokinase family Eco Escherichia coli K12 Length = 300 Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 141/299 (47%), Gaps = 12/299 (4%) Query: 13 RILCIGLPVRDLTFRV-SVPARGSKENATHFDEICGGNALNAAIGIVRLGGRASICGPMG 71 R+ C+G+ V D + V +P K A ++ E+ GG A AA+ RLG + G +G Sbjct: 5 RVACVGITVMDRIYYVEGLPTESGKYVARNYTEVGGGPAATAAVAAARLGAQVDFIGRVG 64 Query: 72 DSQETSSRYIFDKLAQEGIETNHLIHMPNLVTPISAIMIDDSGERTIVTFRDPELWKVKL 131 D +S + +L G+ T + + SAIM+D GER I+ + P+L L Sbjct: 65 DDDTGNS--LLAELESWGVNTRYTKRYNQAKSSQSAIMVDTKGERIIINYPSPDL----L 118 Query: 132 PPTELLLE----DCAAILTESRCAPFCTELCAEAVKRGIPVVVDVDRAMSMREGLLTASS 187 P E L E +L + R + A + G+ V+D D L+ S Sbjct: 119 PDAEWLEEIDFSQWDVVLADVRWHDGAKKAFTLARQAGVMTVLDGDITPQDISELVALSD 178 Query: 188 HLVFSSEPLQETADVTDDGQALHKLAKLTPSFLAGTRGPMGTIWLNENGELEETPAFPVH 247 H FS L V + AL + LT + T+G G WL ENG + PAF V Sbjct: 179 HAAFSEPGLARLTGVKEMASALKQAQTLTNGHVYVTQGSAGCDWL-ENGGRQHQPAFKVD 237 Query: 248 TVDTLGAGDVFHGAFALAITEKQPLRDALRFASAAAALKCTRFGGAYAAPQRTEVEEFL 306 VDT GAGDVFHGA A+A+ L +++RFAS AALKCTR GG P + FL Sbjct: 238 VVDTTGAGDVFHGALAVALATSGDLAESVRFASGVAALKCTRPGGRAGIPDCDQTRSFL 296 >STM4024 [G] COG0524 Sugar kinases, ribokinase family Sty Salmonella typhimurium LT2 Length = 298 Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 137/299 (45%), Gaps = 12/299 (4%) Query: 13 RILCIGLPVRDLTFRV-SVPARGSKENATHFDEICGGNALNAAIGIVRLGGRASICGPMG 71 RI C+G+ V D + V +P G K A + E+ GG A AA+ +LG + G +G Sbjct: 3 RIACVGITVMDRIYYVEGLPTEGGKYVAKRYTEVGGGPAATAAVAAAKLGAQVDFIGRVG 62 Query: 72 DSQETSSRYIFDKLAQEGIETNHLIHMPNLVTPISAIMIDDSGERTIVTFRDPELWKVKL 131 D +S + +L G+ T + ++ SAIM+D GER IV + P+L L Sbjct: 63 DDDTGNS--LLAELESLGVNTRYTRRYTQAMSSQSAIMVDAKGERIIVNYPSPDL----L 116 Query: 132 PPTELL----LEDCAAILTESRCAPFCTELCAEAVKRGIPVVVDVDRAMSMREGLLTASS 187 P + L +L + R + A + G+ V+D D L+ S Sbjct: 117 PDADWLNDIDFSQWDVVLADVRWHDGAKQAFTLARQAGVMTVLDGDITPQDISELVALSD 176 Query: 188 HLVFSSEPLQETADVTDDGQALHKLAKLTPSFLAGTRGPMGTIWLNENGELEETPAFPVH 247 H FS L +++ AL K LT + TRG G WL E + P F V Sbjct: 177 HAAFSEPGLARLTGMSEAIDALKKAQMLTNGHVYVTRGSEGCNWL-EKAAVRHQPGFTVE 235 Query: 248 TVDTLGAGDVFHGAFALAITEKQPLRDALRFASAAAALKCTRFGGAYAAPQRTEVEEFL 306 VDT GAGDVFHGA A + + +A+RFAS AALKCTR GG P + FL Sbjct: 236 VVDTTGAGDVFHGALAFGLASGYAIEEAVRFASGVAALKCTRPGGRAGIPDCEQTRSFL 294 >ZyihV [G] COG0524 Sugar kinases, ribokinase family EcZ Escherichia coli O157:H7 EDL933 Length = 300 Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 139/299 (46%), Gaps = 12/299 (4%) Query: 13 RILCIGLPVRDLTFRV-SVPARGSKENATHFDEICGGNALNAAIGIVRLGGRASICGPMG 71 R+ C+G+ V D + V +P K A ++ E+ GG A AA+ RLG + G +G Sbjct: 5 RVACVGITVMDRIYYVEGLPTESGKYVARNYTEVGGGPAATAAVAAARLGAQVDFIGRVG 64 Query: 72 DSQETSSRYIFDKLAQEGIETNHLIHMPNLVTPISAIMIDDSGERTIVTFRDPELWKVKL 131 D +S + +L G+ T + + SAIM+D GER I+ + P+L L Sbjct: 65 DDDTGNS--LLAELESWGVNTRYTKRYKQAKSSQSAIMVDAKGERIIINYPSPDL----L 118 Query: 132 PPTELLLE----DCAAILTESRCAPFCTELCAEAVKRGIPVVVDVDRAMSMREGLLTASS 187 P E L E +L + R + A + G+ V+D D L+ S Sbjct: 119 PDAEWLEEIDFSQWDVVLADVRWHDGAKKAFTLARQAGVMTVLDGDITPQDISELVALSD 178 Query: 188 HLVFSSEPLQETADVTDDGQALHKLAKLTPSFLAGTRGPMGTIWLNENGELEETPAFPVH 247 H FS L V + AL + LT + T+G G WL ENG + PAF V Sbjct: 179 HAAFSEPGLARLTGVKEMASALKQAQTLTNGHVYVTQGSAGCDWL-ENGGRQHQPAFKVD 237 Query: 248 TVDTLGAGDVFHGAFALAITEKQPLRDALRFASAAAALKCTRFGGAYAAPQRTEVEEFL 306 VDT GAGDVFHGA A+ + L +++RFAS AA KCTR GG P + FL Sbjct: 238 VVDTTGAGDVFHGALAVVLATGGDLAESVRFASGVAASKCTRPGGRAGIPDCDQTRSFL 296 >ECs4806 [G] COG0524 Sugar kinases, ribokinase family Ecs Escherichia coli O157:H7 Length = 300 Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 139/299 (46%), Gaps = 12/299 (4%) Query: 13 RILCIGLPVRDLTFRV-SVPARGSKENATHFDEICGGNALNAAIGIVRLGGRASICGPMG 71 R+ C+G+ V D + V +P K A ++ E+ GG A AA+ RLG + G +G Sbjct: 5 RVACVGITVMDRIYYVEGLPTESGKYVARNYTEVGGGPAATAAVAAARLGAQVDFIGRVG 64 Query: 72 DSQETSSRYIFDKLAQEGIETNHLIHMPNLVTPISAIMIDDSGERTIVTFRDPELWKVKL 131 D +S + +L G+ T + + SAIM+D GER I+ + P+L L Sbjct: 65 DDDTGNS--LLAELESWGVNTRYTKRYKQAKSSQSAIMVDAKGERIIINYPSPDL----L 118 Query: 132 PPTELLLE----DCAAILTESRCAPFCTELCAEAVKRGIPVVVDVDRAMSMREGLLTASS 187 P E L E +L + R + A + G+ V+D D L+ S Sbjct: 119 PDAEWLEEIDFSQWDVVLADVRWHDGAKKAFTLARQAGVMTVLDGDITPQDISELVALSD 178 Query: 188 HLVFSSEPLQETADVTDDGQALHKLAKLTPSFLAGTRGPMGTIWLNENGELEETPAFPVH 247 H FS L V + AL + LT + T+G G WL ENG + PAF V Sbjct: 179 HAAFSEPGLARLTGVKEMASALKQAQTLTNGHVYVTQGSAGCDWL-ENGGRQHQPAFKVD 237 Query: 248 TVDTLGAGDVFHGAFALAITEKQPLRDALRFASAAAALKCTRFGGAYAAPQRTEVEEFL 306 VDT GAGDVFHGA A+ + L +++RFAS AA KCTR GG P + FL Sbjct: 238 VVDTTGAGDVFHGALAVVLATGGDLAESVRFASGVAASKCTRPGGRAGIPDCDQTRSFL 296