BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0060.p (343 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEI1818 [L] COG1643 HrpA-like helicases Bme Brucella melitensis 305 9e-83 CC1185 [L] COG1643 HrpA-like helicases Ccr Caulobacter vibrioides 299 6e-81 mlr5306 [L] COG1643 HrpA-like helicases Mlo Mesorhizobium loti 283 5e-76 SMc02586 [L] COG1643 HrpA-like helicases Sme Sinorhizobium meliloti 280 3e-75 AGc86 [L] COG1643 HrpA-like helicases Atu Agrobacterium tumefaci... 268 2e-71 >BMEI1818 [L] COG1643 HrpA-like helicases Bme Brucella melitensis Length = 710 Score = 305 bits (781), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 186/318 (58%), Positives = 218/318 (68%), Gaps = 34/318 (10%) Query: 9 LPIDAVLDELDRTLEGHNAAVLVAPPGAGKTTRVPLALLDAPWARGKKIIVL-EPRRIAA 67 LP+ +L +LD L H +A+LVAPPGAGKTT VPL +L A W RG+ +IVL EPRR+AA Sbjct: 99 LPVTRILPQLDEALAHHASALLVAPPGAGKTTLVPLHMLGADW-RGEGVIVLLEPRRLAA 157 Query: 68 RASAERMAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPELNGVAAVL 127 RA+A RMA+ LGE GETVGYR+R SKVS TRI VVTEG+F+R ILDDP+LNGVAAVL Sbjct: 158 RAAARRMAQLLGEEPGETVGYRMRLESKVSAKTRILVVTEGVFARMILDDPDLNGVAAVL 217 Query: 128 FDEFHERSLDADLGLALARDAQTGLREDLRILVMSATLDGARVGKLLGDAPVVESEGRAF 187 FDEFHERSLDAD GLALA D Q LR+DL+ILVMSATLDGARV LLGDAPV+ESEGRA+ Sbjct: 218 FDEFHERSLDADFGLALALDVQAALRDDLKILVMSATLDGARVASLLGDAPVIESEGRAY 277 Query: 188 PVETRYVGRKVDAPLERQMAETIAAALXRRRDPPHPNFFGRARARRRGR--DHR------ 239 PV+ RY RK D +E MA I AL G+ R R + R Sbjct: 278 PVDIRYRDRKADEQIEDAMARAIRDALVDETGSILAFLPGQGEIERTARLLEERLPANVL 337 Query: 240 ---------------------XGTRKVVLATSIAETSLTIEGVRIVVDAGLSGLARVPRY 278 G+RK+VLATSIAETS+TI+GVR+V+D SGLAR+P+Y Sbjct: 338 LAPLYGAMEGSAQDAAIRPAPAGSRKIVLATSIAETSITIDGVRVVID---SGLARLPKY 394 Query: 279 EPDIALTRLETVRASRAA 296 EP LTRLETVR SRA+ Sbjct: 395 EPATGLTRLETVRTSRAS 412 >CC1185 [L] COG1643 HrpA-like helicases Ccr Caulobacter vibrioides Length = 813 Score = 299 bits (766), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 223/323 (69%), Gaps = 33/323 (10%) Query: 9 LPIDAVLDELDRTLEGHNAAVLVAPPGAGKTTRVPLALLDAPWARGKKIIVLEPRRIAAR 68 LPI+ VL L L +NA VLVAPPGAGKTT VPLALLDAPW G+KIIVLEPRR+AAR Sbjct: 2 LPIENVLPALKAALLANNATVLVAPPGAGKTTAVPLALLDAPWVEGRKIIVLEPRRLAAR 61 Query: 69 ASAERMAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPELNGVAAVLF 128 A+A RMA LGE G+TVG+RVR SKVS TRIEVVTEG+F+R ILDDP L+GVAAVLF Sbjct: 62 AAAARMASNLGESVGDTVGFRVRLQSKVSARTRIEVVTEGVFTRMILDDPGLDGVAAVLF 121 Query: 129 DEFHERSLDADLGLALARDAQTGLREDLRILVMSATLDGARVGKLLGDAPVVESEGRAFP 188 DEFHERSLDADLGLA ARD Q+ LREDLR+L+MSATLDGAR+ LL DAPVVES+GR FP Sbjct: 122 DEFHERSLDADLGLAFARDVQSVLREDLRLLIMSATLDGARISSLLNDAPVVESQGRMFP 181 Query: 189 VETRYVGR--------KVDAPLERQMAETIAAALX-------------------RRRDPP 221 V+TRY+GR +V +ER +AE + L RR D Sbjct: 182 VDTRYLGRDERQRLEERVGRAVERALAEESGSILVFLPGQGEIRRAESWLNERLRRSDVD 241 Query: 222 HPNFFGRARARRRGRDHR---XGTRKVVLATSIAETSLTIEGVRIVVDAGLSGLARVPRY 278 +G + R G RKVVLATSIAETSLTIEGVR+V+DA G ARVPR+ Sbjct: 242 IAPLYGALEPAAQDRAISPAPAGRRKVVLATSIAETSLTIEGVRVVIDA---GQARVPRF 298 Query: 279 EPDIALTRLETVRASRAAGSAAR 301 +P +TRLETVR SRAA R Sbjct: 299 DPASGITRLETVRVSRAAADQRR 321 >mlr5306 [L] COG1643 HrpA-like helicases Mlo Mesorhizobium loti Length = 820 Score = 283 bits (723), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 177/317 (55%), Positives = 208/317 (65%), Gaps = 32/317 (10%) Query: 9 LPIDAVLDELDRTLEGHNAAVLVAPPGAGKTTRVPLALLDAPWARGKKIIVLEPRRIAAR 68 LP+ AVL L L N+AVLVAPPGAGKTT VPLALLDAPW KI++LEPRR+AAR Sbjct: 9 LPVSAVLQALGAALAERNSAVLVAPPGAGKTTLVPLALLDAPWLGAGKIVLLEPRRLAAR 68 Query: 69 ASAERMAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPELNGVAAVLF 128 A+A RMA+ L + G T+GY +R ++ S TRI VVTEG+ +R ILDDPEL G++AV+F Sbjct: 69 AAARRMAQLLDQEPGATIGYAMRMENRTSAKTRILVVTEGVLARMILDDPELPGISAVVF 128 Query: 129 DEFHERSLDADLGLALARDAQTGLREDLRILVMSATLDGARVGKLLGDAPVVESEGRAFP 188 DEFHERSLD D GLALA D Q LR DLR+LVMSATLDGARV KLL APV+ESEGRAFP Sbjct: 129 DEFHERSLDGDFGLALALDVQGALRPDLRLLVMSATLDGARVAKLLSGAPVIESEGRAFP 188 Query: 189 VETRYVGRKVDAPLERQMAETIAAALXRRRDP-----PHPNFFGRARARRRGR------- 236 V+ Y R P+E MA+ I AAL P R R G+ Sbjct: 189 VDISYDERPAGVPIEDAMAKAIRAALADEGGSVLAFLPGQREIERTAERLAGKVGADTDI 248 Query: 237 -------DHRX----------GTRKVVLATSIAETSLTIEGVRIVVDAGLSGLARVPRYE 279 D G RKVVLATSIAETS+TI+GVR+V+D SGL+R+PRYE Sbjct: 249 VPLYGQLDGNAQDAAIKPAPPGRRKVVLATSIAETSITIDGVRVVID---SGLSRLPRYE 305 Query: 280 PDIALTRLETVRASRAA 296 P LTRLETVR S+A+ Sbjct: 306 PASGLTRLETVRVSKAS 322 >SMc02586 [L] COG1643 HrpA-like helicases Sme Sinorhizobium meliloti Length = 820 Score = 280 bits (717), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 176/317 (55%), Positives = 208/317 (65%), Gaps = 32/317 (10%) Query: 9 LPIDAVLDELDRTLEGHNAAVLVAPPGAGKTTRVPLALLDAPWARGKKIIVLEPRRIAAR 68 LPI +L L L + VL APPGAGKTT VPL LLD PW KII+LEPRR+AAR Sbjct: 7 LPIREILPGLGDALASAGSVVLSAPPGAGKTTLVPLFLLDQPWRGDGKIILLEPRRLAAR 66 Query: 69 ASAERMAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPELNGVAAVLF 128 A+A RMA+ LGE+ GETVGYR+R ++VS TRIEVVTEG+FSR ILDDPEL+GV+AVLF Sbjct: 67 AAAGRMAELLGEKVGETVGYRMRLDNRVSGKTRIEVVTEGVFSRMILDDPELSGVSAVLF 126 Query: 129 DEFHERSLDADLGLALARDAQTGLREDLRILVMSATLDGARVGKLLGDAPVVESEGRAFP 188 DEFHERSLDAD GLALA D Q+ LREDLRI+VMSATLD R+ L+GDAPV++SEGR+FP Sbjct: 127 DEFHERSLDADFGLALALDVQSALREDLRIVVMSATLDVERIAGLVGDAPVLKSEGRSFP 186 Query: 189 VETRYVGRKVDAPLERQMAETIAAALXRRRDPPHPNFFGRARARRRG------------- 235 ++ RY R +E M TIA A + G+A R Sbjct: 187 IDIRYENRAAGESVEDAMVRTIAEAHRSEKGSILAFLPGQAEIARTAARLADRFGEATAI 246 Query: 236 ----------------RDHRXGTRKVVLATSIAETSLTIEGVRIVVDAGLSGLARVPRYE 279 R GTRK+VLATSIAETS+TI+GVRIVVD SGL R+P +E Sbjct: 247 VPLYGNLSQKEQDAAIRPAPKGTRKIVLATSIAETSITIDGVRIVVD---SGLQRLPVFE 303 Query: 280 PDIALTRLETVRASRAA 296 +TRLETVR SRA+ Sbjct: 304 ASTGITRLETVRVSRAS 320 >AGc86 [L] COG1643 HrpA-like helicases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 866 Score = 268 bits (684), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 168/317 (52%), Positives = 206/317 (64%), Gaps = 32/317 (10%) Query: 9 LPIDAVLDELDRTLEGHNAAVLVAPPGAGKTTRVPLALLDAPWARGKKIIVLEPRRIAAR 68 LP+ AVL ++ + L AVL APPGAGKTT VPL LL W KII+LEPRR+AAR Sbjct: 53 LPVSAVLGDIAQVLAAKKRAVLSAPPGAGKTTLVPLRLLHEDWRGDGKIILLEPRRLAAR 112 Query: 69 ASAERMAKTLGERAGETVGYRVRFGSKVSRATRIEVVTEGIFSRQILDDPELNGVAAVLF 128 A+A RMA+ L E GETVGYR+R ++VS TRIEVVTEG+F+R +LDDPEL+GV+ V+F Sbjct: 113 AAAGRMAELLRENVGETVGYRMRLDNRVSSKTRIEVVTEGVFARMVLDDPELSGVSTVIF 172 Query: 129 DEFHERSLDADLGLALARDAQTGLREDLRILVMSATLDGARVGKLLGDAPVVESEGRAFP 188 DEFHERSLD D GLALA D Q GLREDLRILVMSATLD R+G L+GDAPV++S GR FP Sbjct: 173 DEFHERSLDGDFGLALALDVQAGLREDLRILVMSATLDVERIGALMGDAPVIQSLGRTFP 232 Query: 189 VETRYVGRKVDAPLERQMAETIAAALXRRRDP-----PHPNFFGRARARRRGR--DHRX- 240 ++ RY R ++ ++A+ I A P R +R GR D Sbjct: 233 IDIRYEERWQGIHVDEKVAKAITEAHASETGSILAFLPGQAEITRTASRLEGRFPDDTDI 292 Query: 241 ---------------------GTRKVVLATSIAETSLTIEGVRIVVDAGLSGLARVPRYE 279 G RK+VLATSIAETS+TI+GVR+V+D SGL R+P +E Sbjct: 293 IPLYGNLSQKEQDAAIKPAPGGRRKIVLATSIAETSITIDGVRVVID---SGLQRLPVFE 349 Query: 280 PDIALTRLETVRASRAA 296 P +TRLETVR SRA+ Sbjct: 350 PATGITRLETVRVSRAS 366