BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0058.p (203 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll5118 [K] COG1595 DNA-directed RNA polymerase specialized sigm... 187 2e-47 PA2896 [K] COG1595 DNA-directed RNA polymerase specialized sigma... 87 3e-17 RSc1055 [K] COG1595 DNA-directed RNA polymerase specialized sigm... 82 7e-16 RSc2361 [K] COG1595 DNA-directed RNA polymerase specialized sigm... 79 5e-15 DR0180 [K] COG1595 DNA-directed RNA polymerase specialized sigma... 78 1e-14 >mll5118 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Mlo Mesorhizobium loti Length = 188 Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 90/182 (49%), Positives = 122/182 (67%) Query: 18 ARATSDETLLARIAKNDRTSMHTLYARHNVRVYRFVLRMVRDTTMAEDLVSQVFLDVWRT 77 A +D L+ R+AK DR ++ L+ RH+ RVYRFV R MA+D+ ++VFL++WR Sbjct: 3 ASTETDRALVDRVAKGDRAAVRLLFMRHHARVYRFVARQTGSEMMADDIANEVFLELWRQ 62 Query: 78 AAQFEGRSQVSTWLLSIARFKALTALRQRKHEDIDQDDVLEIADGADTPETSLDRATTSE 137 A FEGRS+VSTWLL IARFKAL+ LR++K + ID + + DGADTPE + + Sbjct: 63 APGFEGRSEVSTWLLGIARFKALSLLRKKKEDWIDDEAAAAVPDGADTPEVVTMKEDKAA 122 Query: 138 ILRACVAKLSPAHREIINLVYYHEKSVEEAGEIIGIPQSTVKTRMFYARKQLADLLRGAG 197 LR + L HR +I+L YYH +SV E GE++ IP +TVKTRMFYARK+L + L+ AG Sbjct: 123 ALRRFIDALPEEHRTVIDLAYYHGQSVTEIGEVLAIPVATVKTRMFYARKKLGESLKAAG 182 Query: 198 VD 199 D Sbjct: 183 YD 184 >PA2896 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Pae Pseudomonas aeruginosa Length = 194 Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 4/178 (2%) Query: 20 ATSDETLLARIAKNDRTSMHTLYARHNVRVYRFVLRMVRDTTMAEDLVSQVFLDVWRTAA 79 A SDETLLAR K D + LY RH +YRF+ + T +A+++ + +L + R+ + Sbjct: 11 AGSDETLLARYRKGDSAAFEVLYQRHRQGLYRFLCGLAGQTELADEIYQETWLSLIRSES 70 Query: 80 QFEGRSQVSTWLLSIARFKALTALRQRKHEDIDQDDVLE----IADGADTPETSLDRATT 135 Q +GR+ TWL IAR + + R+ QD E D PE L + Sbjct: 71 QPQGRASFRTWLYQIARNRLIDHWRKHGQRQPLQDSYDEQLHAQPDQGAGPEQQLSLSRD 130 Query: 136 SEILRACVAKLSPAHREIINLVYYHEKSVEEAGEIIGIPQSTVKTRMFYARKQLADLL 193 E L++ + L RE+ + + E + E + P TVK+R YA ++L LL Sbjct: 131 GERLQSALETLPEEQREVFLMRAHGELELAEIATLTQSPLETVKSRFRYAVQKLRRLL 188 >RSc1055 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Rso Ralstonia solanacearum Length = 199 Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 10/183 (5%) Query: 22 SDETLLARIAKNDRTSMHTLYARHNVRVYRFVLRMVRDTTMAEDLVSQVFLDVWRTAAQF 81 +D+ L+ R+ + D+ + L +++ ++ R + R++RD ED+ F+ +R QF Sbjct: 6 ADQILVERVQQGDKRAFELLVVKYHRKIIRLISRLIRDAAEVEDVAQDAFIKAYRALPQF 65 Query: 82 EGRSQVSTWLLSIA-----RFKALTALRQRKHEDIDQDDVLEIADGA-----DTPETSLD 131 G S TWL IA + A R DID ++ ADG +TP++ L Sbjct: 66 RGESAFYTWLYRIAVNTAKNYLATQGRRPESSTDIDTEEAETFADGEQLRDINTPDSMLH 125 Query: 132 RATTSEILRACVAKLSPAHREIINLVYYHEKSVEEAGEIIGIPQSTVKTRMFYARKQLAD 191 +E + + L R I L S EE E + P TV++R+F AR+ +A+ Sbjct: 126 TKQVAETVNRAMEALPEELRTAITLREIEGLSYEEIAEAMECPIGTVRSRIFRAREAIAE 185 Query: 192 LLR 194 LR Sbjct: 186 KLR 188 >RSc2361 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Rso Ralstonia solanacearum Length = 213 Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 18/181 (9%) Query: 17 AARATSDET-----LLARIAKNDRTSMHTLYARHNVRVYRFVLRMVRDTTMAEDLVSQVF 71 AARA E LL RI +R ++ LYAR +++ LR++ AED++ + F Sbjct: 22 AARAPGAEADELAALLQRIGLGEREALRALYARCAAKLFGLALRILVRRDWAEDVLQESF 81 Query: 72 LDVWRTAAQFEGRSQVS---TWLLSIARFKALTALR----QRKHEDIDQDDVLEIADGAD 124 +++WR AA + R Q++ TW+ +I R +AL LR +R E + DD A Sbjct: 82 VNIWRHAADY--RPQLAAPMTWMATIVRNRALDCLRRQRAERVAESVPLDDAHADALADH 139 Query: 125 TPETSLDRATTSEILRA---CVAKLSPAHREIINLVYYHEKSVEEAGEIIGIPQSTVKTR 181 P + D A + RA C+ +L P RE+++L Y + S E +++ +P TVK+ Sbjct: 140 APGPA-DLALAGQQARALAECLKRLDPRQREVVSLAYLRDLSHSELAQVLSVPLGTVKSW 198 Query: 182 M 182 M Sbjct: 199 M 199 >DR0180 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Dra Deinococcus radiodurans Length = 229 Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 88/171 (51%), Gaps = 5/171 (2%) Query: 28 ARIAKNDRTSMHTLYARHNVRVYRFVLRMVRDTTMAEDLVSQVFLDVWRTAAQFEGRSQV 87 A++ D + H + + R+Y ++ R+ ++ A DL +VF WR+ F +V Sbjct: 52 AQLLTGDEAAWHRFISEYEGRIYGYLYRLEGNSEDALDLTQEVFYRAWRSIRTFRPGERV 111 Query: 88 STWLLSIARFKALTALRQRKH-----EDIDQDDVLEIADGADTPETSLDRATTSEILRAC 142 WL +AR + + R+++H E+ +D E+ A +P + + + ++ Sbjct: 112 LPWLYQVARNTQIESHRRKQHARFSLEEAHEDIGFEVTSEARSPVQAAESEQAQDRVQRA 171 Query: 143 VAKLSPAHREIINLVYYHEKSVEEAGEIIGIPQSTVKTRMFYARKQLADLL 193 + +L+P +RE + L + + + +E + G+ T K+R+F A++QLA+LL Sbjct: 172 LMRLAPEYREAVVLRFVEDLTYDEIARLQGVATGTAKSRVFRAKEQLAELL 222