BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0057.p (231 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value MA4255 [O] COG0785 Cytochrome c biogenesis protein Mac Methanosa... 86 9e-17 BH1194 [O] COG0785 Cytochrome c biogenesis protein Bha Bacillus ... 80 3e-15 FN0804 [O] COG0785 Cytochrome c biogenesis protein Fnu Fusobacte... 75 1e-13 SPy1559 [O] COG0785 Cytochrome c biogenesis protein Spy Streptoc... 74 4e-13 PM1706 [O] COG0785 Cytochrome c biogenesis protein Pmu Pasteurel... 73 5e-13 >MA4255 [O] COG0785 Cytochrome c biogenesis protein Mac Methanosarcina acetivorans str.C2A Length = 216 Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 6/193 (3%) Query: 10 AGVATVAAPCTLPMLPILLGVSIGQTDKARPAMIALGFVMSFSAVALLLSAITRAFDFDP 69 AGV +V +PC LP+LP +L S G+ K RP I LG +SF+ + ++ SA AF Sbjct: 14 AGVLSVLSPCILPLLPAVLASSTGK-GKLRPLAIVLGVSISFTLMGVVTSAFGAAFQAYL 72 Query: 70 NVLRTGAAVLLAGFGLLMIWPAPFEWLAIRLTGAAGGLGRAAPSQGLFGGFVLGSTLGLV 129 L+ A +L+ GL M++ R AG +G G +LG +LG++ Sbjct: 73 GQLKILAELLIITMGLAMLFEISLFNAFARFPLLAG-----MNEKGPISGLLLGLSLGVL 127 Query: 130 WTPCAGPVLGSILTIVATSKDTAWASLQLVTYAIGAAIPMLAIAYGGQAVTTRVRSMAPI 189 W PC GP+L SILT+VA A +L L Y+ G A+PML +AY T++++ ++ Sbjct: 128 WIPCVGPILASILTMVALEGSAASGALTLFIYSAGFAVPMLLLAYSAHLSTSKIKLISKY 187 Query: 190 APRLQQGFGVVIV 202 ++G G+V++ Sbjct: 188 DAAFKKGAGIVLL 200 >BH1194 [O] COG0785 Cytochrome c biogenesis protein Bha Bacillus halodurans Length = 238 Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 22/237 (9%) Query: 6 LALLAGVATVAAPCTLPMLPILLGVSIGQT--------DKARPAMIALGFVMSFSAVALL 57 LA AGV + +PC P++P+ L G D+ M +LGF++ F+++ + Sbjct: 8 LAFFAGVVSFLSPCVFPLVPVYLAQLTGTQISGNEITADRKLILMRSLGFILGFTSIFIF 67 Query: 58 LSA----ITRAFDFDPNVLRTGAAVLLAGFGLLMIWPAPFEWLAIRLTGAAGGLGRAAPS 113 L A I + F + + +++ FGL M+ ++IR+ + L +A P Sbjct: 68 LGASSTFIGQLFWGNRQLFEQIGGIIITVFGLQMMGV-----ISIRMLLSEKRL-QAKPR 121 Query: 114 QG--LFGGFVLGSTLGLVWTPCAGPVLGSILTIVATSKDTAWASLQ-LVTYAIGAAIPML 170 Q ++G WTPC G VLG+IL ++A +T W+ + L Y++G AIP Sbjct: 122 QSASFANSVLIGFLFATGWTPCIGLVLGAIL-VLAGDANTMWSGMSMLFVYSMGLAIPFF 180 Query: 171 AIAYGGQAVTTRVRSMAPIAPRLQQGFGVVIVAFAALSYLQYDTLIVAWLTQFYPNG 227 +A +VR + P +Q+G GVV+VA L + + I A+L + P G Sbjct: 181 LVALLWSRSLHKVRKLNKWLPTIQKGSGVVMVALGVLLFTGQFSTIAAYLARINPFG 237 >FN0804 [O] COG0785 Cytochrome c biogenesis protein Fnu Fusobacterium nucleatum Length = 218 Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 11/192 (5%) Query: 7 ALLAGVATVAAPCTLPMLPILLGVSIGQTDKARPAMIALGFVMSFSAVALLL---SAITR 63 A LAGVA+ +PC P++P+ +SI + + L FV+ S ++L + + Sbjct: 11 AYLAGVASFFSPCIFPIIPVY--ISILSNGEKKSLSKTLAFVLGLSVTYIVLGFGAGVIG 68 Query: 64 AFDFDPNVLRTGAAVLLAGFGLLMIWPAPFEWLAIRLTGAAGGLGRAAPSQGLFGGFVLG 123 + NV G +++ M E L ++ + A +Q +F F+LG Sbjct: 69 DLFLNNNVRIIGGIIVVILGLFQM------EILKLKFLEKTKIMNYEAENQSIFSTFLLG 122 Query: 124 STLGLVWTPCAGPVLGSILTIVATSKDTAWASLQLVTYAIGAAIPMLAIAYGGQAVTTRV 183 T L WTPC GP+L SIL + ++S DT + + + Y +G A P + + +A+ ++ Sbjct: 123 LTFSLGWTPCVGPILASILILASSSGDTTNSVMLMFIYLLGMATPFVIFSLASKALFKKM 182 Query: 184 RSMAPIAPRLQQ 195 + P +++ Sbjct: 183 TFIKKYLPAIKK 194 >SPy1559 [O] COG0785 Cytochrome c biogenesis protein Spy Streptococcus pyogenes M1 GAS Length = 236 Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 33/220 (15%) Query: 10 AGVATVAAPCTLPMLPILLGVSIGQTDKARPAMIA-----------LGFVMSFSAVALLL 58 AG+ + +PC P+LP+ LG+ + D + L F+ S + ++L Sbjct: 14 AGLLSFFSPCIFPVLPVYLGILLDADDSKTITIFGKKLYWYGIVKTLAFIFGLSTIFVIL 73 Query: 59 SAITRAFDFDPNVLRT-------GAAVLLAG---FGLLMIWPAPFEWLAIRLTGAAGGLG 108 F N+L GA V++ G GL+ I F+ + Sbjct: 74 G---YGAGFLGNILYAVWFRYLLGALVIILGIHQMGLITIKSLQFQ--------KSLTFH 122 Query: 109 RAAPSQGLFGGFVLGSTLGLVWTPCAGPVLGSILTIVATSKDTAW-ASLQLVTYAIGAAI 167 GLF F+LG T WTPC GPVL S+L +VA+ + AW + ++ Y +G I Sbjct: 123 NNKNRNGLFNAFILGLTFSFGWTPCVGPVLSSVLALVASGGNGAWQGGVLMIIYTLGLGI 182 Query: 168 PMLAIAYGGQAVTTRVRSMAPIAPRLQQGFGVVIVAFAAL 207 P L I++ V + + P L++ GV+I+ L Sbjct: 183 PFLLISFASGIVLKQFNKLKPHILLLKKVGGVLIIVMGIL 222 >PM1706 [O] COG0785 Cytochrome c biogenesis protein Pmu Pasteurella multocida Length = 242 Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 11/216 (5%) Query: 18 PCTLPMLPILLGVSIGQTDKARPAMIALGFVMSFSAVALLLSAITRAFDFDPNVLRTGAA 77 PC LP+LPI+ ++ + K +A G +SF+ V ++++I A + LR GAA Sbjct: 22 PCVLPILPIVASSAMAK-RKVGLFTLAFGMAISFTLVGTVIASIGLALGLNSEYLRYGAA 80 Query: 78 VL--LAGFGLLMIWPAPFEWLAIRLTGAAGGLGRAAPS----QGLFGGFVLGSTLGLVWT 131 +L L F LL + + L R T G G A S + G F +G LG+VW Sbjct: 81 ILMLLVAFWLL---SSRLQALLSRYTSLLTGKGEAWLSGFNPESATGQFFVGLLLGIVWA 137 Query: 132 PCAGPVLGSILTIVATSKDTAWASLQLVTYAIGAAIPMLAIA-YGGQAVTTRVRSMAPIA 190 PC GP LG+ + + + + A ++ +V +++GA IP++AI Q + S+A Sbjct: 138 PCIGPTLGAAIALASQGEALASVAIVMVIFSLGAVIPLIAIGLLSRQFFREKRESLANAG 197 Query: 191 PRLQQGFGVVIVAFAALSYLQYDTLIVAWLTQFYPN 226 + + G ++ L +D I WL + P Sbjct: 198 QKGRIVMGWSLLVVGLLVLTGFDKQIEIWLVELSPE 233