BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0055.p (301 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02255 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit ... 484 e-136 PA3930 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 ... 403 e-112 STM0360 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1... 382 e-106 RC0288 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 ... 376 e-104 RP216 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 R... 374 e-103 >SMc02255 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Sme Sinorhizobium meliloti Length = 493 Score = 484 bits (1245), Expect = e-136, Method: Compositional matrix adjust. Identities = 237/300 (79%), Positives = 257/300 (85%) Query: 1 MFEGWDAVVLARAQFAFTMSFHIVFPAFSIGLASYFAVLEALWLATKREVYINLFNYWLK 60 +FE +DA VLAR QFAFT+SFHI+FPAFSIGLASY AVLEALWL K EVY+ LFN+W Sbjct: 24 VFEAFDATVLARIQFAFTVSFHIIFPAFSIGLASYLAVLEALWLWKKDEVYLELFNFWKT 83 Query: 61 IFAVAFGMGVVSGIVMSYQFGTNWSAFADKTGPVIGPMMAYEVLTAFFLEAGFLGVMLFG 120 IFAVAFGMGVVSGIVMSYQFGTNWS F+DK GPVIGP+M YEVLTAFFLEAGFLGVMLFG Sbjct: 84 IFAVAFGMGVVSGIVMSYQFGTNWSVFSDKAGPVIGPLMGYEVLTAFFLEAGFLGVMLFG 143 Query: 121 LERVGPRLHFVATLMVAIGTLISAFWILSANSWMQTPTGHAVNADGQFVAADWLKVIFNP 180 L RVGP+LHF AT MVA+GTLISA WIL+ NSWMQTP G +VN GQF+ DW VIFNP Sbjct: 144 LNRVGPKLHFFATAMVALGTLISATWILAVNSWMQTPAGFSVNEAGQFIPDDWWAVIFNP 203 Query: 181 SFPYRLVHMVLAAYLTTSLVVGAVGAWHLLRDQHLAGARVMFSMAMWMATLVAPIQILAG 240 SFPYRL HMVLAAYLTT+ VVGA GAWHLLR AR MFSMAMWMA +VAPIQI AG Sbjct: 204 SFPYRLTHMVLAAYLTTAFVVGACGAWHLLRKTAPRRARTMFSMAMWMAAIVAPIQIFAG 263 Query: 241 DQHGLNTLEHQPAKVMAMEGHYQSHTDGAPLILFGWPDQAEAKVKYAIEVPKLSSLILKH 300 DQHGLNTLEHQPAKVMAMEGHYQSH +GAPLILFG P+ AE +V YA+E+PKLSSLILKH Sbjct: 264 DQHGLNTLEHQPAKVMAMEGHYQSHPEGAPLILFGMPNSAEKRVDYALEIPKLSSLILKH 323 >PA3930 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Pae Pseudomonas aeruginosa Length = 488 Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/298 (66%), Positives = 233/298 (78%), Gaps = 2/298 (0%) Query: 4 GWDAVVLARAQFAFTMSFHIVFPAFSIGLASYFAVLEALWLATKREVYINLFNYWLKIFA 63 G +A+ LAR QFAFT+SFHI+FPA +IGLASY AVLE LWL T EVY +L+++W KIFA Sbjct: 3 GLEAIDLARIQFAFTVSFHIIFPAITIGLASYLAVLEGLWLKTNEEVYRDLYHFWSKIFA 62 Query: 64 VAFGMGVVSGIVMSYQFGTNWSAFADKTGPVIGPMMAYEVLTAFFLEAGFLGVMLFGLER 123 V FGMGVVSG+VM+YQFGTNWS F+D G + GP++ YEVLTAFFLEAGFLGVMLFG R Sbjct: 63 VNFGMGVVSGLVMAYQFGTNWSHFSDFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNR 122 Query: 124 VGPRLHFVATLMVAIGTLISAFWILSANSWMQTPTGHAVNADGQFVAADWLKVIFNPSFP 183 VGP LHF AT+MVAIGTLIS FWIL++NSWMQTP G + DG+ + DWL VIFNPSFP Sbjct: 123 VGPGLHFFATVMVAIGTLISTFWILASNSWMQTPQGFEI-VDGRVIPVDWLAVIFNPSFP 181 Query: 184 YRLVHMVLAAYLTTSLVVGAVGAWHLLRDQHLAGARVMFSMAMWMATLVAPIQILAGDQH 243 YRL+HM +AA+L T+ VGA AWHLLR + R M SMAMWMA +VAP+Q L GD H Sbjct: 182 YRLLHMSVAAFLATAFFVGASAAWHLLRGRDNPAIRKMLSMAMWMALIVAPVQALIGDAH 241 Query: 244 GLNTLEHQPAKVMAMEGHY-QSHTDGAPLILFGWPDQAEAKVKYAIEVPKLSSLILKH 300 GLNTLEHQPAK+ AMEGH+ S + PLILFGWPD + ++ +E+P L SLILKH Sbjct: 242 GLNTLEHQPAKIAAMEGHWDNSSGEPTPLILFGWPDMQREETRFKVEIPVLGSLILKH 299 >STM0360 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Sty Salmonella typhimurium LT2 Length = 467 Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/296 (61%), Positives = 228/296 (77%), Gaps = 2/296 (0%) Query: 6 DAVVLARAQFAFTMSFHIVFPAFSIGLASYFAVLEALWLATKREVYINLFNYWLKIFAVA 65 DA LAR QFAFT+SFHI+FPA +IGLASY VLE LWL T+ V+ +L+ +WLKIFAV Sbjct: 4 DAFFLARLQFAFTVSFHIIFPAITIGLASYLVVLEGLWLKTRNPVWRSLYQFWLKIFAVN 63 Query: 66 FGMGVVSGIVMSYQFGTNWSAFADKTGPVIGPMMAYEVLTAFFLEAGFLGVMLFGLERVG 125 FGMGVVSG+VM+YQFGTNWS F+ G + GP++ YEVLTAFFLEAGFLGVMLFG +VG Sbjct: 64 FGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNKVG 123 Query: 126 PRLHFVATLMVAIGTLISAFWILSANSWMQTPTGHAVNADGQFVAADWLKVIFNPSFPYR 185 P LHF++T MVA+GTL+S FWIL++NSWM TP G ++ +GQ V DW VIFNPSFPYR Sbjct: 124 PGLHFLSTCMVALGTLMSTFWILASNSWMHTPQGFEIH-NGQVVPVDWFAVIFNPSFPYR 182 Query: 186 LVHMVLAAYLTTSLVVGAVGAWHLLRDQHLAGARVMFSMAMWMATLVAPIQILAGDQHGL 245 L+HM +AA+L++++ VGA AWHLL+ R MFSMA+WMA +VAP+Q L GD HGL Sbjct: 183 LLHMSVAAFLSSAMFVGASAAWHLLKGNDTPAIRRMFSMALWMAVVVAPVQALIGDMHGL 242 Query: 246 NTLEHQPAKVMAMEGHYQSHT-DGAPLILFGWPDQAEAKVKYAIEVPKLSSLILKH 300 NTL+HQP K+ A+EGH+++ + PL L GWPD + +YA+E+P L SLIL H Sbjct: 243 NTLKHQPVKIAAIEGHWENTPGEPTPLTLVGWPDMEAERTRYALEIPALGSLILTH 298 >RC0288 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Rco Rickettsia conorii Length = 456 Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust. Identities = 175/296 (59%), Positives = 232/296 (78%), Gaps = 1/296 (0%) Query: 5 WDAVVLARAQFAFTMSFHIVFPAFSIGLASYFAVLEALWLATKREVYINLFNYWLKIFAV 64 +D +L+R QFAFT+SFHI+FPAF+IGLAS+ AV+E LWL TK+ VY ++ +W+KIFAV Sbjct: 3 FDQGLLSRIQFAFTISFHIIFPAFTIGLASFLAVIEGLWLKTKKPVYQEIYKFWVKIFAV 62 Query: 65 AFGMGVVSGIVMSYQFGTNWSAFADKTGPVIGPMMAYEVLTAFFLEAGFLGVMLFGLERV 124 FGMGVVSG+VMSYQFGTNWS F+DK G V+GP++ +EV TAFFLE+ FLG+MLFG +V Sbjct: 63 TFGMGVVSGVVMSYQFGTNWSNFSDKVGNVLGPLLGFEVFTAFFLESSFLGIMLFGFNKV 122 Query: 125 GPRLHFVATLMVAIGTLISAFWILSANSWMQTPTGHAVNADGQFVAADWLKVIFNPSFPY 184 ++HF++TL+VA+GT+ISAFWIL+A+SWM TP G + +G F +WL++IFNPSFPY Sbjct: 123 SKKVHFISTLIVAVGTVISAFWILAASSWMHTPAGFELRGEGFFYPLNWLEIIFNPSFPY 182 Query: 185 RLVHMVLAAYLTTSLVVGAVGAWHLLRDQHLAGARVMFSMAMWMATLVAPIQILAGDQHG 244 R HM++AAYLTTS V+G V +++LL +++ A++M MA+ MA +VAPIQI+ GD HG Sbjct: 183 RFFHMIMAAYLTTSFVIGGVASFYLLNNRYKEHAKIMLFMAVLMALIVAPIQIVIGDLHG 242 Query: 245 LNTLEHQPAKVMAMEGHYQSHTDGAPLILFGWPDQAEAKVKYAIEVPKLSSLILKH 300 LNTL++QP KV AMEG + + GA L G+PD E K KYA+E+P SSLIL H Sbjct: 243 LNTLKYQPVKVSAMEGIWNTD-KGAAFNLIGFPDGEEEKTKYAVEIPYASSLILTH 297 >RP216 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Rpr Rickettsia prowazekii Length = 453 Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust. Identities = 174/296 (58%), Positives = 229/296 (77%), Gaps = 1/296 (0%) Query: 5 WDAVVLARAQFAFTMSFHIVFPAFSIGLASYFAVLEALWLATKREVYINLFNYWLKIFAV 64 +D V+L+R QFAFT+SFHIVFP F+IGLAS+ AV+E LWL TK +Y ++ +W+KIFAV Sbjct: 3 FDQVLLSRIQFAFTISFHIVFPTFTIGLASFLAVIEGLWLKTKNPIYQEIYKFWVKIFAV 62 Query: 65 AFGMGVVSGIVMSYQFGTNWSAFADKTGPVIGPMMAYEVLTAFFLEAGFLGVMLFGLERV 124 FGMGVVSG+VMSYQFGTNWS F+DK G V+GP++ +EV TAFFLE+ FLG+MLFG +V Sbjct: 63 TFGMGVVSGVVMSYQFGTNWSNFSDKVGNVLGPLLGFEVFTAFFLESSFLGIMLFGFNKV 122 Query: 125 GPRLHFVATLMVAIGTLISAFWILSANSWMQTPTGHAVNADGQFVAADWLKVIFNPSFPY 184 ++HF++TL+VAIGT+ISAFWIL+A+SWM TP G + +G F +WL++IFNPSFPY Sbjct: 123 TKKVHFISTLIVAIGTIISAFWILAASSWMHTPAGFELRDEGFFYPLNWLEIIFNPSFPY 182 Query: 185 RLVHMVLAAYLTTSLVVGAVGAWHLLRDQHLAGARVMFSMAMWMATLVAPIQILAGDQHG 244 R HM+ A+YLTTS V+G V +++LL +++ A++M MA+ MA +V+PIQI GD HG Sbjct: 183 RFFHMITASYLTTSFVIGGVASFYLLNNRYKKHAKIMLFMAVLMALIVSPIQIFIGDLHG 242 Query: 245 LNTLEHQPAKVMAMEGHYQSHTDGAPLILFGWPDQAEAKVKYAIEVPKLSSLILKH 300 LNTL++QP KV A+EG + + GA L G PD+ E K KYAIE+P SSLIL H Sbjct: 243 LNTLKYQPVKVSAIEGIWNTE-KGASFNLIGLPDKEEEKTKYAIEIPYASSLILTH 297