BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0051.p (345 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc2905 [ET] COG0834 ABC-type amino acid transport/signal transd... 390 e-108 SMc02118 [ET] COG0834 ABC-type amino acid transport/signal trans... 390 e-108 mlr8149 [ET] COG0834 ABC-type amino acid transport/signal transd... 387 e-107 VC1362 [ET] COG0834 ABC-type amino acid transport/signal transdu... 380 e-105 BMEI1211 [ET] COG0834 ABC-type amino acid transport/signal trans... 374 e-103 >AGc2905 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 343 Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/340 (54%), Positives = 239/340 (70%), Gaps = 7/340 (2%) Query: 8 LTIGLAVAVLVAAAAFTYERYDTRTLKRTVRRGDVLCGVNKGLPGFSIPDDKGNWTGFDV 67 L+ + AVL A+ + TL+ +G V CGV+ G+PGFS PDDKG W+G DV Sbjct: 9 LSAAIGAAVLGGASVAS-----AATLQDVKGKGFVTCGVSAGIPGFSNPDDKGEWSGIDV 63 Query: 68 DFCRAVASAIFDDPSKAKFVPLDASERFKELQNRKVDILSRNSTWSMSRETNYDLYFPAV 127 D+CR +A+A+F DPSKAKFV L + +RF LQ+ +VD+L+RN+TW++SR+T+ F V Sbjct: 64 DYCRGIATAVFGDPSKAKFVALSSKDRFPALQSGEVDVLTRNTTWTISRDTSLGFNFRTV 123 Query: 128 AYYDGQGFMLPRSRNIDSALDLNGSKVCVQANTTTQLNLADYFRANNMKYTEMKFDKLDD 187 YYDGQGF+ + N+ SAL+L+G+ VCVQ TTT+LNLADYF+ NN++Y + F+K D Sbjct: 124 NYYDGQGFIAKKGLNVKSALELSGAAVCVQTGTTTELNLADYFKTNNLQYNPVVFEKESD 183 Query: 188 VVKAYNSGQCDTLTSDASQLYALRLNLAKPSDHTILADIISKEPLAPVVRLRDDDWMMIV 247 AY+SG+CD T+D S LYA+RL L P D+ +L ++ISKEPL P VR DD W IV Sbjct: 184 ATSAYDSGRCDVYTTDQSGLYAIRLKLKNPDDNIVLPEVISKEPLGPAVRQGDDQWFDIV 243 Query: 248 KWTLYAMINAEELGITSKNIDEALKSKKPEVMRLVGTEGA--YGEDLGLTKDWAVRIIRH 305 W YAM+NAEELGITSKN+DE S P+V RL+GTE G DLG+ DWA I++ Sbjct: 244 TWVHYAMVNAEELGITSKNVDEQKTSANPDVKRLLGTEEGTKIGTDLGVGNDWAYNIVKL 303 Query: 306 VGNYGEVYDRNVGADSKLKIPRGMNQLWNAGGVQYAPPIR 345 VGNYGEV+DRNVGA S LKI RG N LW GG+QYAPP+R Sbjct: 304 VGNYGEVFDRNVGAGSPLKIERGQNALWTKGGLQYAPPVR 343 >SMc02118 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 341 Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust. Identities = 179/316 (56%), Positives = 233/316 (73%), Gaps = 2/316 (0%) Query: 32 TLKRTVRRGDVLCGVNKGLPGFSIPDDKGNWTGFDVDFCRAVASAIFDDPSKAKFVPLDA 91 TL +G V CGVN GL GF+ PD GNW+GFDVD+C+A+A+AIF D SK K+ PL A Sbjct: 26 TLDDVKAKGFVQCGVNTGLAGFAAPDASGNWSGFDVDYCKAIAAAIFGDGSKVKYTPLSA 85 Query: 92 SERFKELQNRKVDILSRNSTWSMSRETNYDLYFPAVAYYDGQGFMLPRSRNIDSALDLNG 151 ERF LQ+ +VD+L+RN+TWS++R+T F V YYDGQGFM+ + ++ SAL+L+G Sbjct: 86 KERFPALQSGEVDVLARNTTWSINRDTALGFNFRPVNYYDGQGFMVRKELDVKSALELSG 145 Query: 152 SKVCVQANTTTQLNLADYFRANNMKYTEMKFDKLDDVVKAYNSGQCDTLTSDASQLYALR 211 + VCVQ TTT+LNLADYF+ANN++Y + F+KL++V AY++G+CD T+D S LY+LR Sbjct: 146 AAVCVQTGTTTELNLADYFKANNLQYNPVVFEKLEEVNAAYDAGRCDVYTTDQSGLYSLR 205 Query: 212 LNLAKPSDHTILADIISKEPLAPVVRLRDDDWMMIVKWTLYAMINAEELGITSKNIDEAL 271 L L+KP DH +L +IISKEPLAP VR DD W IV W YA++ AEE G+T N++E Sbjct: 206 LTLSKPDDHIVLPEIISKEPLAPAVRQGDDQWFDIVSWVHYALVQAEEFGVTQANLEEMK 265 Query: 272 KSKKPEVMRLVGTEG--AYGEDLGLTKDWAVRIIRHVGNYGEVYDRNVGADSKLKIPRGM 329 KS P+V R +G E G DLGLT +WAV I++ VGNYGEV+DRN+GA S LKI RG+ Sbjct: 266 KSTNPDVQRFLGVEADSKIGTDLGLTNEWAVNIVKAVGNYGEVFDRNIGAGSPLKIERGL 325 Query: 330 NQLWNAGGVQYAPPIR 345 N LWN GG+QYAPP+R Sbjct: 326 NALWNKGGLQYAPPVR 341 >mlr8149 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Mlo Mesorhizobium loti Length = 342 Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/339 (53%), Positives = 238/339 (70%), Gaps = 5/339 (1%) Query: 12 LAVAVLVAAA-AFTYERYDTRTLKRTVRRGDVLCGVNKGLPGFSIPDDKGNWTGFDVDFC 70 +A+ +L AA F TL +G + CGV+ GL GFS PDDKG+W G D DFC Sbjct: 4 IAIGILGAATLGFMASAASATTLDTVKAKGFIQCGVSTGLAGFSAPDDKGDWQGIDADFC 63 Query: 71 RAVASAIFDDPSKAKFVPLDASERFKELQNRKVDILSRNSTWSMSRETNYDLYFPAVAYY 130 RAVA+A+F D +K KF PL A ERF LQ+ +VDILSRN+TW+++R+T L F YY Sbjct: 64 RAVAAAVFGDGTKVKFTPLSAKERFTALQSGEVDILSRNTTWTINRDTALGLNFVGTTYY 123 Query: 131 DGQGFMLPRSR--NIDSALDLNGSKVCVQANTTTQLNLADYFRANNMKYTEMKFDKLDDV 188 DGQGFM+ + ++SAL L+G+ VCVQ+ TTT+LNLADYF+AN M+Y + F+KL++V Sbjct: 124 DGQGFMINAKKLPGVNSALQLSGAAVCVQSGTTTELNLADYFKANKMEYNPVVFEKLEEV 183 Query: 189 VKAYNSGQCDTLTSDASQLYALRLNLAKPSDHTILADIISKEPLAPVVRLRDDDWMMIVK 248 AY++G+CD T+D S LY +RL L P+DH +L +IISKEPL P VR DD W IVK Sbjct: 184 NAAYDAGRCDVYTTDQSGLYGIRLTLGSPADHVVLPEIISKEPLGPAVRQGDDQWYHIVK 243 Query: 249 WTLYAMINAEELGITSKNIDEALKSKKPEVMRLVGTEG--AYGEDLGLTKDWAVRIIRHV 306 WT +A+++AEELGIT N+DE S PE+ R++G E G DLG++ DW V I++ V Sbjct: 244 WTYFALLDAEELGITKANVDEMKNSASPEIKRVLGQEADTKIGADLGVSNDWVVNIVKAV 303 Query: 307 GNYGEVYDRNVGADSKLKIPRGMNQLWNAGGVQYAPPIR 345 GNYGE++DRNVG+ S LKI RG+N LW GG+QYAPPIR Sbjct: 304 GNYGEMFDRNVGSGSPLKIARGINALWTKGGLQYAPPIR 342 >VC1362 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Vch Vibrio cholerae Length = 342 Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust. Identities = 173/314 (55%), Positives = 226/314 (71%) Query: 32 TLKRTVRRGDVLCGVNKGLPGFSIPDDKGNWTGFDVDFCRAVASAIFDDPSKAKFVPLDA 91 TL + + +G + CGV+ GLPGFS P+ KG W G DV++C+A+A+A+ D +K KFVPL A Sbjct: 29 TLDKVLSQGFITCGVSTGLPGFSNPNAKGEWEGIDVEYCQAMAAAVLGDKTKVKFVPLTA 88 Query: 92 SERFKELQNRKVDILSRNSTWSMSRETNYDLYFPAVAYYDGQGFMLPRSRNIDSALDLNG 151 ERF LQ+ ++D+LSRN+TW++ R++ L F V YYDGQGFM+ + + SA +LNG Sbjct: 89 KERFTALQSGEIDVLSRNTTWTLQRDSALGLNFVGVNYYDGQGFMVKKDLGVKSAKELNG 148 Query: 152 SKVCVQANTTTQLNLADYFRANNMKYTEMKFDKLDDVVKAYNSGQCDTLTSDASQLYALR 211 + VCVQ+ TTT+LNLADYFR + M Y + FD K +++G+CD LT+D S LYALR Sbjct: 149 ASVCVQSGTTTELNLADYFRNSGMTYKPVVFDTAAQTSKGFDAGRCDVLTTDQSGLYALR 208 Query: 212 LNLAKPSDHTILADIISKEPLAPVVRLRDDDWMMIVKWTLYAMINAEELGITSKNIDEAL 271 LNL KP +L +IISKEPL PVVR DD W + KW LYAM+NAEE GITSKN+DE + Sbjct: 209 LNLEKPDSAVVLPEIISKEPLGPVVRQDDDKWFNVAKWVLYAMVNAEEYGITSKNVDEMM 268 Query: 272 KSKKPEVMRLVGTEGAYGEDLGLTKDWAVRIIRHVGNYGEVYDRNVGADSKLKIPRGMNQ 331 KS PEV R++G +G G LG+ DW+ +I++ VGNYGE +DR VG+ S LKI RG+N Sbjct: 269 KSDNPEVKRILGLDGPKGTGLGIRDDWSYQIVKQVGNYGESFDRTVGSGSPLKIDRGVNA 328 Query: 332 LWNAGGVQYAPPIR 345 LWNAGG YAPPIR Sbjct: 329 LWNAGGFMYAPPIR 342 >BMEI1211 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Bme Brucella melitensis Length = 343 Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/339 (53%), Positives = 235/339 (69%), Gaps = 5/339 (1%) Query: 12 LAVAVLVAAAAFTYER-YDTRTLKRTVRRGDVLCGVNKGLPGFSIPDDKGNWTGFDVDFC 70 L VL AAA F TL +G + CGVN GL GF+ P+DKG W+GFDVD+C Sbjct: 5 LMTGVLGAAALFGIASGASADTLSDVKAKGFLQCGVNTGLLGFASPNDKGEWSGFDVDYC 64 Query: 71 RAVASAIFDDPSKAKFVPLDASERFKELQNRKVDILSRNSTWSMSRETNYDLYFPAVAYY 130 RAVASAIF DP+K KF PL+A ERF Q+ +VD+L RN+TW++SR+T+ L F + YY Sbjct: 65 RAVASAIFGDPTKVKFTPLNAKERFTAFQSGEVDVLIRNTTWTISRDTSLGLDFAGINYY 124 Query: 131 DGQGFMLPRSR--NIDSALDLNGSKVCVQANTTTQLNLADYFRANNMKYTEMKFDKLDDV 188 DGQGFM+ + I+SAL L+G+ +CVQA TTT+LN+ADYFRAN M+Y + F+K+++ Sbjct: 125 DGQGFMINSKKLAGINSALQLSGASICVQAGTTTELNMADYFRANKMEYNPVVFEKIEEA 184 Query: 189 VKAYNSGQCDTLTSDASQLYALRLNLAKPSDHTILADIISKEPLAPVVRLRDDDWMMIVK 248 AY+SG+CD T+D S LY +RL LA P DH IL +IISKEP VR D W +V+ Sbjct: 185 NAAYDSGRCDAYTTDQSSLYGVRLALANPDDHVILPEIISKEPFGLTVRQGDARWADVVR 244 Query: 249 WTLYAMINAEELGITSKNIDEALKSKKPEVMRLVGTEG--AYGEDLGLTKDWAVRIIRHV 306 WT A++NAEE GIT N++E KS P++ RL+G E G DLGL KDW V+II+ V Sbjct: 245 WTHNALLNAEEYGITQANVEEMKKSDNPDIKRLLGAEADTKIGTDLGLDKDWVVKIIKGV 304 Query: 307 GNYGEVYDRNVGADSKLKIPRGMNQLWNAGGVQYAPPIR 345 GNYGE+++RN+G+ S LKI RG+N WN GG+QY P+R Sbjct: 305 GNYGEIFERNIGSGSPLKIARGLNAQWNKGGLQYGIPVR 343