BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0094.0012.p (415 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0527 [L] COG1570 Exonuclease VII, large subunit Bme Brucell... 234 2e-61 mll6896 [L] COG1570 Exonuclease VII, large subunit Mlo Mesorhizo... 228 2e-59 SMc00378 [L] COG1570 Exonuclease VII, large subunit Sme Sinorhiz... 225 1e-58 AGc461 [L] COG1570 Exonuclease VII, large subunit Atu Agrobacter... 221 3e-57 CC2246 [L] COG1570 Exonuclease VII, large subunit Ccr Caulobacte... 168 2e-41 >BMEII0527 [L] COG1570 Exonuclease VII, large subunit Bme Brucella melitensis Length = 513 Score = 234 bits (598), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 108/143 (75%), Positives = 129/143 (90%) Query: 9 NAPEFTVSELSSALKRTVEDRFGHVRVRGEISGFRGPHSSGHCYFALKDESAKIEAVIWK 68 N E++VSE+S ALKRTVED FGHVRVRGEISG+RGPHSSGH YFALKD+ A++EAVIW+ Sbjct: 15 NVAEYSVSEISGALKRTVEDTFGHVRVRGEISGYRGPHSSGHAYFALKDDRARLEAVIWR 74 Query: 69 FAHARMRFKPQEGLEVIATGKLTTYPNSSKYQIVIDSLEPAGVGALMALMEERKKKLAAE 128 + +R+RF+P+EG+EVIATGKLTTYP SSKYQIVI+ +EPAG GALMAL+EERK++LAAE Sbjct: 75 GSMSRLRFRPEEGMEVIATGKLTTYPGSSKYQIVIEQMEPAGAGALMALLEERKQRLAAE 134 Query: 129 GLFDEARKQLLPWLPEVIGVVTS 151 GLFD A KQLLP++P VIGVVTS Sbjct: 135 GLFDPALKQLLPFMPRVIGVVTS 157 >mll6896 [L] COG1570 Exonuclease VII, large subunit Mlo Mesorhizobium loti Length = 521 Score = 228 bits (581), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 103/143 (72%), Positives = 125/143 (87%) Query: 9 NAPEFTVSELSSALKRTVEDRFGHVRVRGEISGFRGPHSSGHCYFALKDESAKIEAVIWK 68 NA E+TVSE+S ALKRTVED FG+VRVRGEISG+RGPHSSGH YFALKD+ A+++AV+WK Sbjct: 11 NATEYTVSEISGALKRTVEDVFGNVRVRGEISGYRGPHSSGHAYFALKDDRARLDAVVWK 70 Query: 69 FAHARMRFKPQEGLEVIATGKLTTYPNSSKYQIVIDSLEPAGVGALMALMEERKKKLAAE 128 +R++F+P+EG+EVIATGKLTTYP S YQIVID+LEPAG GALMAL+EERK++L AE Sbjct: 71 GTMSRLKFRPEEGMEVIATGKLTTYPGKSNYQIVIDNLEPAGAGALMALLEERKRRLQAE 130 Query: 129 GLFDEARKQLLPWLPEVIGVVTS 151 GLFD RK+ LP++P IGVVTS Sbjct: 131 GLFDAGRKRRLPFMPRTIGVVTS 153 Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 13/110 (11%) Query: 306 RALVTTMQRLEARVAHSGQLLSALSYRGVLARGFALVRDAHGHALHSAAAVGPNAGLSIE 365 R + ++RL +++ + +LL+ LS++ VLARGFALV++A G + AA V L++E Sbjct: 425 RVISLRLERLRGQLSQAERLLTTLSHKAVLARGFALVKNADGAVIKQAADVVSGMALTLE 484 Query: 366 FADGRVAATANADQPPATVAPDSQPKPQPREAKPAAPKRVTKPVDQGSLF 415 FADG TA+A VA +P+P AKP+ + +P +QGSLF Sbjct: 485 FADG----TADA------VATSGAARPKP-AAKPSTKAK--EPGNQGSLF 521 >SMc00378 [L] COG1570 Exonuclease VII, large subunit Sme Sinorhizobium meliloti Length = 526 Score = 225 bits (574), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 103/143 (72%), Positives = 126/143 (88%) Query: 9 NAPEFTVSELSSALKRTVEDRFGHVRVRGEISGFRGPHSSGHCYFALKDESAKIEAVIWK 68 N E++VSELS ++KRTVE F HVRVRGEISG+RGPHSSGH YFALKD+ A+I+AV+WK Sbjct: 12 NVAEYSVSELSGSIKRTVEQAFEHVRVRGEISGYRGPHSSGHAYFALKDDRARIDAVVWK 71 Query: 69 FAHARMRFKPQEGLEVIATGKLTTYPNSSKYQIVIDSLEPAGVGALMALMEERKKKLAAE 128 AR++F+P+EG+EVIATG++TT+P SSKYQIVIDSLEPAG GALMAL+EERK+KLAAE Sbjct: 72 TTFARLKFRPEEGMEVIATGRVTTFPGSSKYQIVIDSLEPAGAGALMALIEERKRKLAAE 131 Query: 129 GLFDEARKQLLPWLPEVIGVVTS 151 GLFD RK+ LP++P V+GVVTS Sbjct: 132 GLFDAGRKRPLPFMPRVVGVVTS 154 Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 49/109 (44%), Positives = 64/109 (58%), Gaps = 13/109 (11%) Query: 307 ALVTTMQRLEARVAHSGQLLSALSYRGVLARGFALVRDAHGHALHSAAAVGPNAGLSIEF 366 A+ ++R+++ +A ++L +LSY VL RGFALVRDA G + AAAV P LS+EF Sbjct: 431 AIAADLRRMKSALAAQDRVLQSLSYHSVLQRGFALVRDAAGEPVKQAAAVHPGMALSLEF 490 Query: 367 ADGRVAATANADQPPATVAPDSQPKPQPREAKPAAPKRVTKPVDQGSLF 415 ADGR+AA A D AP S P+ R P R +P QGSLF Sbjct: 491 ADGRIAAVAGED----GTAPQS---PKKR------PARSGEPTKQGSLF 526 >AGc461 [L] COG1570 Exonuclease VII, large subunit Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 557 Score = 221 bits (562), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 102/145 (70%), Positives = 127/145 (87%) Query: 7 LVNAPEFTVSELSSALKRTVEDRFGHVRVRGEISGFRGPHSSGHCYFALKDESAKIEAVI 66 L N EF+VSELS ++KRTVE F VRVRGEISG+RGPHSSGH YF+LKD+ A+I+AVI Sbjct: 35 LSNLAEFSVSELSGSIKRTVETAFEQVRVRGEISGYRGPHSSGHAYFSLKDDRARIDAVI 94 Query: 67 WKFAHARMRFKPQEGLEVIATGKLTTYPNSSKYQIVIDSLEPAGVGALMALMEERKKKLA 126 WK +R++F+P+EG+EVIATGK+TT+P SSKYQIVI+SLEPAG GALMAL+E+R+++LA Sbjct: 95 WKGTFSRLKFRPEEGMEVIATGKITTFPGSSKYQIVIESLEPAGAGALMALLEDRRRRLA 154 Query: 127 AEGLFDEARKQLLPWLPEVIGVVTS 151 AEGLFD ARK+ LP++P VIGVVTS Sbjct: 155 AEGLFDSARKRPLPFMPRVIGVVTS 179 >CC2246 [L] COG1570 Exonuclease VII, large subunit Ccr Caulobacter vibrioides Length = 505 Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 83/147 (56%), Positives = 108/147 (73%), Gaps = 1/147 (0%) Query: 5 PNLVNAPEFTVSELSSALKRTVEDRFGHVRVRGEISGFRGPHSSGHCYFALKDESAKIEA 64 P NAP ++VSEL+ ALKRT+EDR+G VR+RGE+S HS+GH Y +KD+ + I+ Sbjct: 6 PTDSNAPPYSVSELAFALKRTLEDRYGFVRLRGELSKVT-HHSNGHVYLTIKDDKSAIDG 64 Query: 65 VIWKFAHARMRFKPQEGLEVIATGKLTTYPNSSKYQIVIDSLEPAGVGALMALMEERKKK 124 V+WK + +P+ GLEVI TGK+TTYP S+YQIVIDS+E AGVGAL+A +E K K Sbjct: 65 VVWKGNVRGLGVRPEHGLEVIVTGKITTYPAGSRYQIVIDSMEAAGVGALLAQLERLKAK 124 Query: 125 LAAEGLFDEARKQLLPWLPEVIGVVTS 151 LAAEGLF RK+ LP +P V+GV+TS Sbjct: 125 LAAEGLFAPERKRPLPSMPAVVGVITS 151