BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0091.0006.p         (140 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl1733 [K] COG0583 Transcriptional regulator Atu Agrobacterium ...   120   1e-27
mlr5687 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ...   105   3e-23
SMc04223 [K] COG0583 Transcriptional regulator Sme Sinorhizobium...    97   8e-21
AGl2011 [K] COG0583 Transcriptional regulator Atu Agrobacterium ...    83   2e-16
AGl1696 [K] COG0583 Transcriptional regulator Atu Agrobacterium ...    72   5e-13

>AGl1733 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 293

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 85/135 (62%)

Query: 1   VRQEGSRRGGEKLTEDEFGWFAAKRFVWPRGDALPLATLAPPCGVRALAVRALDKAGIAW 60
           +R+E  RR GE L  + FGW+A  +F   +G+ L LA L+P CGVR +A  ALD A IAW
Sbjct: 148 IRREDDRRDGEVLGPEHFGWYATPQFEHRQGEPLRLAALSPACGVRNIATHALDAAAIAW 207

Query: 61  TESFVGGGVTAVVAAALAGLAVAPLVRRIAPPGLVDIGPAHKLPRLGTSKVMLHSKVGDP 120
           TE F+GG  + V AA  AGLA++    R+APPG V++     LP L +S++++ S + D 
Sbjct: 208 TEVFLGGTSSMVTAAVSAGLAISAFSCRLAPPGTVEVSQRFGLPPLPSSEIIMFSTLTDS 267

Query: 121 AKLAALRTLAATFRS 135
               ALRTLAA FR 
Sbjct: 268 RSREALRTLAAAFRE 282


>mlr5687 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 302

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 74/135 (54%)

Query: 1   VRQEGSRRGGEKLTEDEFGWFAAKRFVWPRGDALPLATLAPPCGVRALAVRALDKAGIAW 60
           VR+E  RR GE L  + FGW+A   FV+  G+ L LA  AP C +R +    LD  GI W
Sbjct: 144 VRREDDRRDGEVLAPEHFGWYATPDFVYRAGEPLRLAASAPSCSIRDVITGTLDAVGIPW 203

Query: 61  TESFVGGGVTAVVAAALAGLAVAPLVRRIAPPGLVDIGPAHKLPRLGTSKVMLHSKVGDP 120
           T+ F+G G  AV  A  AGLAV     R+ PPG +++     LP L  S++ML S + D 
Sbjct: 204 TQVFLGCGSFAVAEAVSAGLAVGAFSSRLVPPGTMEVSRKFGLPPLPASEIMLLSTLSDA 263

Query: 121 AKLAALRTLAATFRS 135
               ALRTL   FR 
Sbjct: 264 QSRDALRTLTMAFRE 278


>SMc04223 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 211

 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 1   VRQEGSRRGGEKLTEDEFGWFAAKRFVWPRGDALPLATLAPPCGVRALAVRALDKAGIAW 60
           VR +  RR GE L  + FGWFA+  F    G+ L +A+    C VR +A R LD A I W
Sbjct: 22  VRSDDDRRDGEVLGPEHFGWFASSDFEHHTGEPLRIASHPSCCTVREVATRLLDAASIRW 81

Query: 61  TESFVGGGVTAVVAAALAGLAVAPLVRRIAPPGLVDIGPAHKLPRLGTSKVMLHSKVGDP 120
           TE FV GG +AV AA  AGLAVA    R+A   ++++     LP + +  ++LHS + DP
Sbjct: 82  TEVFV-GGTSAVTAALSAGLAVAAFPCRLATADMIEVSQMLNLPSIPSLSIVLHSSLTDP 140

Query: 121 AKLAALRTLAATF 133
                LR + A F
Sbjct: 141 KTRETLRAITAAF 153


>AGl2011 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 283

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 1   VRQEGSRRGGEKLTEDEFGWFAAKRFVWPRGDALPLATLAPPCGVRALAVRALDKAGIAW 60
           +R +  RR GE L ++ FGW+ +  F       +PL     PC +RA+A+RAL+ A IAW
Sbjct: 149 LRHDDIRRDGEPLFQESFGWYGSADFDLRSDVPVPLVLQPEPCNLRAMALRALESADIAW 208

Query: 61  TESFVGGGVTAVVAAALAGLAVAPLVRRIAPPGLVDIGPAH--KLPRLGTSKVMLHSKVG 118
            E FVG G TAV AA  AG+ V  L +  AP  +  +      +LP+L    VM+ +  G
Sbjct: 209 REVFVGTGATAVGAAVEAGIGVGLLAQSAAPASVRQVRSRSLPELPKLDV--VMISTVTG 266

Query: 119 DPAKLAALRTLAATFR 134
           D A  A LR +   FR
Sbjct: 267 DHAN-AVLRRITGAFR 281


>AGl1696 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 280

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 1   VRQEGSRRGGEKLTEDEFGWFAAKRFVWPRGDALPLATLAPPCGVRALAVRALDKAGIAW 60
           +R+ G    GE L  D  GW  A  +      A+PL +L P CGVR +A+  L KAG+ W
Sbjct: 144 IRRNGGGSDGEVLRTDRLGWRVAPDWRPRANSAVPLVSLGPGCGVRDIAISELGKAGVVW 203

Query: 61  TESFVGGGVTAVVAAALAGLAVAPLVRRIAPPGLVDIGPAHKLPRLGTSKVMLHSKVGDP 120
            ++F  G  +A++    AG  +A L   I+  GL D G    LP L  S ++L S+   P
Sbjct: 204 RDAFTAGSCSALLEGVHAGAGIAAL-GDISARGLPDRGAELGLPPLPPSDIVLLSRARTP 262

Query: 121 AKLAALRTLAA 131
           +  +A+R L A
Sbjct: 263 SHASAIRALVA 273