BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0091.0002.p         (69 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC2175 [NU] COG1886 Flagellar motor switch/type III secretory pa...    62   3e-10

>CC2175 [NU] COG1886 Flagellar motor switch/type III secretory pathway
          protein Ccr Caulobacter vibrioides
          Length = 103

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 42/57 (73%)

Query: 1  VVLGTTTMPIHQVMRLSRGAIIELDATEADEVKVLANNLPVASGVVLVDRNRIAVEV 57
          V+LG + +P+ Q++R+ RGA+I LDA   DEV +LANN P+A G + +  +RIA++V
Sbjct: 33 VLLGRSILPMQQLLRMGRGAVIPLDAKTHDEVWILANNHPIARGEIQISDDRIAIQV 89