BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0090.0001.p         (149 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1890 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, ...   183   1e-46
CC0022 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, s...   176   2e-44
SMb20343 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase,...   172   2e-43
PA1881 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, s...   171   4e-43
SMa1491 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, ...   171   4e-43

>RSc1890 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Rso Ralstonia solanacearum
          Length = 155

 Score =  183 bits (464), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/148 (58%), Positives = 110/148 (74%), Gaps = 1/148 (0%)

Query: 3   NLKINGKTITVDVEDDTPLLWAIRENVGLTGTKYGCGIAQCGACTVHIDGVAMRSCGVTV 62
           +L +N + + V+ +  TPLLW +R+++ LTGTK+GCG+A CGACTVH+DG A+RSC + V
Sbjct: 2   DLDVNRRPVKVECDPATPLLWVLRDHLSLTGTKFGCGVAACGACTVHVDGAAVRSCVLPV 61

Query: 63  SEAAGKEITTIEGLA-AGGVMHKVQLAWIASDVPQCGYCQSGMIMAVAALLKDNPKPTDD 121
           +  AG+ ITTIEGLA A G  H +Q AWI   VPQCGYCQSGM+MA A LL   P P+D 
Sbjct: 62  AAVAGRRITTIEGLAEAPGKRHALQQAWIDEQVPQCGYCQSGMLMAAADLLARQPDPSDA 121

Query: 122 DINDAITNICRCGTFQQVREAIHAAANA 149
           DI+ AITN+CRCGT+ +VR AI  AA A
Sbjct: 122 DIDAAITNLCRCGTYPRVRTAIKRAAQA 149


>CC0022 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Ccr Caulobacter vibrioides
          Length = 174

 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/147 (55%), Positives = 105/147 (71%), Gaps = 4/147 (2%)

Query: 3   NLKINGKTITVDVEDDTPLLWAIRENVGLTGTKYGCGIAQCGACTVHIDGVAMRSCGVTV 62
            L INGK ++V    +TPLLW +R+ +G+TGTK+GCG+AQCGACTVH+DG  +RSC   +
Sbjct: 2   TLDINGKPVSVQAAPETPLLWVLRDELGMTGTKFGCGLAQCGACTVHMDGQPIRSCVTPI 61

Query: 63  SEAAGKEITTIEGLAAGGVMHKVQLAWIASDVPQCGYCQSGMIMAVAALLKDNPKPTDDD 122
                 ++TTIEGL   G  H VQ AW+  DVPQCGYCQSG IM+  ALL   PKP+D D
Sbjct: 62  EAVGAAKVTTIEGL---GGQHPVQQAWVRHDVPQCGYCQSGQIMSACALLAQKPKPSDQD 118

Query: 123 INDAIT-NICRCGTFQQVREAIHAAAN 148
           I++A+  NICRCG +Q++R AI  AA+
Sbjct: 119 IDEAMAGNICRCGAYQRIRAAIKDAAD 145


>SMb20343 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Sme Sinorhizobium meliloti
          Length = 152

 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 1   MANLKINGKTITVDVEDDTPLLWAIRENVGLTGTKYGCGIAQCGACTVHIDGVAMRSCGV 60
           M  +KING    ++ E D PLLWAIR+ VGLTGTK+GCG+AQCGACTV++DG   RSC  
Sbjct: 1   MVTVKINGVEHKIEAEADMPLLWAIRDLVGLTGTKFGCGMAQCGACTVYVDGSPTRSCQT 60

Query: 61  TVSEAAGKEITTIEGLAAGGVMHKVQLAWIASDVPQCGYCQSGMIMAVAALLKDNPKPTD 120
            + +  G E+TT+EGL  G V   VQ  W   DVPQCGYCQSG IM+   LL +NPKPTD
Sbjct: 61  FIGDIEGAEVTTVEGL-KGKVAETVQAVWADLDVPQCGYCQSGQIMSATDLLANNPKPTD 119

Query: 121 DDINDAIT-NICRCGTFQQVREAIHAAAN 148
            DI+ A++ N+CRC T+ ++R  IH AA 
Sbjct: 120 ADIDAAMSGNLCRCATYHRIRAGIHEAAK 148


>PA1881 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Pae Pseudomonas aeruginosa
          Length = 153

 Score =  171 bits (434), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/147 (56%), Positives = 108/147 (73%), Gaps = 2/147 (1%)

Query: 3   NLKINGKTITVDVEDDTPLLWAIRENVGLTGTKYGCGIAQCGACTVHIDGVAMRSCGVTV 62
           +L +NGK +T+DV+ + PLLWAIRE+ GL GTK+GCG+AQCGACTV +DG A+RSC + V
Sbjct: 4   SLVLNGKNVTLDVDPNMPLLWAIRESAGLHGTKFGCGMAQCGACTVQLDGTAVRSCVLPV 63

Query: 63  SEAAGKEITTIEGLAAGGVMHKVQLAWIASDVPQCGYCQSGMIMAVAALLKDNPKPTDDD 122
           S  AGK +TTIEG+ +      VQ AW+   VPQCGYCQSG IM+  ALL+ N  P+D D
Sbjct: 64  SAVAGKRVTTIEGIQSKP-GKAVQDAWVKLQVPQCGYCQSGQIMSATALLEQNASPSDAD 122

Query: 123 INDAIT-NICRCGTFQQVREAIHAAAN 148
           I+ A+  NICRC  + ++R AIH AA+
Sbjct: 123 IDAAMNGNICRCAAYVRIRAAIHEAAD 149


>SMa1491 [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small
           subunit CoxS/CutS homologs Sme Sinorhizobium meliloti
          Length = 182

 Score =  171 bits (434), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 97/134 (72%)

Query: 3   NLKINGKTITVDVEDDTPLLWAIRENVGLTGTKYGCGIAQCGACTVHIDGVAMRSCGVTV 62
            L ING    VD+E DTPLLW +R+ +G+TGTKYGCG+AQCGACTV +DG A RSC   V
Sbjct: 30  ELTINGSRHQVDIEPDTPLLWVLRDELGMTGTKYGCGLAQCGACTVLVDGQATRSCVTPV 89

Query: 63  SEAAGKEITTIEGLAAGGVMHKVQLAWIASDVPQCGYCQSGMIMAVAALLKDNPKPTDDD 122
              AG EI TIE +    V  KV  AW+++ VPQCGYCQSG +MA  AL+K +P+P+D+D
Sbjct: 90  ESVAGSEIMTIEAITEDPVGQKVVEAWVSNQVPQCGYCQSGQVMAATALIKQSPRPSDED 149

Query: 123 INDAITNICRCGTF 136
           I  A+ N+CRCGT+
Sbjct: 150 IAGAMINLCRCGTY 163