BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0005.p (299 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ddpC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transpo... 228 2e-59 ECs2089 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 226 4e-59 BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 226 4e-59 Z2225 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transp... 226 7e-59 AGc4571 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 221 1e-57 >ddpC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Eco Escherichia coli K12 Length = 298 Score = 228 bits (580), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 180/296 (60%), Gaps = 6/296 (2%) Query: 1 MSTVAPTVEPAGPVRTSGLAAAFEQTRYVLSENKVTGFAFALLVLIVFAALFGPYVVPYD 60 +S V P R +G + ++L + +T + ++VL++ +F P++ +D Sbjct: 3 LSEETSAVRPQKQTRFNG-----AKLVWMLKGSPLTVTSAVIIVLMLLMMIFSPWLATHD 57 Query: 61 PLASDTAAALKPPSAAHWFGTDQLGRDIFSRVIVATRLDTFIAVASVVLVFLMGGLAGIA 120 P A D A L PPSAAHWFGTD++GRD+FSRV+V ++ + V + ++G L G Sbjct: 58 PNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCL 117 Query: 121 AGYFGGWTDLIVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYARVARA 180 +G GG D I+ RI D +++ P VL M + AALG ++ N ++A AIV P Y R+AR Sbjct: 118 SGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARG 177 Query: 181 EANVRRNAGFVQAARLSGNGEYRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL 240 +A V R +VQAA+ G + ++ HIL N +P +IVQ SL +G AIL AA L FIGL Sbjct: 178 QALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGL 237 Query: 241 GVRPPTAEWGIMVAEGAGFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQ 296 G + P+AEWG MVA G +++ +WW FPG A+++ FNL GDG+RD++DP+ Sbjct: 238 GAQQPSAEWGAMVANGRNYVLD-QWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPK 292 >ECs2089 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Ecs Escherichia coli O157:H7 Length = 298 Score = 226 bits (577), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 179/296 (60%), Gaps = 6/296 (2%) Query: 1 MSTVAPTVEPAGPVRTSGLAAAFEQTRYVLSENKVTGFAFALLVLIVFAALFGPYVVPYD 60 +S V P R +G + ++L + +T ++VL++ +F P++ +D Sbjct: 3 LSEETSAVRPQKQTRFNG-----AKLVWMLKGSPLTVTGAVIIVLMLLMMIFSPWLATHD 57 Query: 61 PLASDTAAALKPPSAAHWFGTDQLGRDIFSRVIVATRLDTFIAVASVVLVFLMGGLAGIA 120 P A D A L PPSAAHWFGTD++GRD+FSRV+V ++ + V + ++G L G Sbjct: 58 PNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCL 117 Query: 121 AGYFGGWTDLIVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYARVARA 180 +G GG D I+ RI D +++ P VL M + AALG ++ N ++A AIV P Y R+AR Sbjct: 118 SGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARG 177 Query: 181 EANVRRNAGFVQAARLSGNGEYRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL 240 +A V R +VQAA+ G + ++ HIL N +P +IVQ SL +G AIL AA L FIGL Sbjct: 178 QALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGL 237 Query: 241 GVRPPTAEWGIMVAEGAGFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQ 296 G + P+AEWG MVA G +++ +WW FPG A+++ FNL GDG+RD++DP+ Sbjct: 238 GAQQPSAEWGAMVANGRNYVLD-QWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPK 292 >BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Bha Bacillus halodurans Length = 301 Score = 226 bits (577), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 107/270 (39%), Positives = 168/270 (62%), Gaps = 1/270 (0%) Query: 30 LSENKVTGFAFALLVLIVFAALFGPYVVPYDPLASDTAAALKPPSAAHWFGTDQLGRDIF 89 L++NK +L++ + AL GPY +DP + L PSA HWFGTD GRDIF Sbjct: 33 LAKNKAAMVGLSLIIFFIVVALIGPYFTTHDPYEPNVMNKLAEPSAEHWFGTDHHGRDIF 92 Query: 90 SRVIVATRLDTFIAVASVVLVFLMGGLAGIAAGYFGGWTDLIVGRIADTIMAFPLFVLAM 149 +R+I + ++ SVVL ++G + G+ +GY+G D ++ RI D ++AFP +LA+ Sbjct: 93 TRIIHGMSITLYVGFFSVVLGAIVGVILGVVSGYYGRLVDTVIMRIMDVLLAFPGILLAL 152 Query: 150 GIVAALGNTVQNIIIATAIVNFPLYARVARAEANVRRNAGFVQAARLSGNGEYRILLGHI 209 I++ LG ++ N+IIA I + P++AR+ R R ++ A + G + RI+ HI Sbjct: 153 AIISILGGSINNVIIAVGIFSIPVFARIVRGSTLAVRKLEYIDAVKALGASDARIIFKHI 212 Query: 210 LPNIMPIMIVQMSLTMGYAILNAAGLSFIGLGVRPPTAEWGIMVAEGAGFMVSGEWWIAL 269 LPN++ +IVQ +L++ +IL A+ LSF+GLG +PP EWG M+++G +M +AL Sbjct: 213 LPNVLSPIIVQGTLSIATSILTASALSFLGLGAQPPIPEWGAMLSDGRNYMYDAP-HVAL 271 Query: 270 FPGLALMIAVFCFNLLGDGLRDIVDPQRRT 299 FPGLA+++ V FN+ GDGLRD +DP+ + Sbjct: 272 FPGLAIVVVVLAFNIFGDGLRDALDPKSKN 301 >Z2225 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components EcZ Escherichia coli O157:H7 EDL933 Length = 298 Score = 226 bits (575), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 178/296 (60%), Gaps = 6/296 (2%) Query: 1 MSTVAPTVEPAGPVRTSGLAAAFEQTRYVLSENKVTGFAFALLVLIVFAALFGPYVVPYD 60 +S V P R +G + ++L + +T ++VL++ +F P++ +D Sbjct: 3 LSEETSAVRPQKQTRFNG-----AKLVWMLKGSPLTVTGAVIIVLMLLMMIFSPWLATHD 57 Query: 61 PLASDTAAALKPPSAAHWFGTDQLGRDIFSRVIVATRLDTFIAVASVVLVFLMGGLAGIA 120 P A D A L PPSAAHWFGTD++GRD+FSRV V ++ + V + ++G L G Sbjct: 58 PNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVXVGSQQSILAGLVVVAIAGMIGSLLGCL 117 Query: 121 AGYFGGWTDLIVGRIADTIMAFPLFVLAMGIVAALGNTVQNIIIATAIVNFPLYARVARA 180 +G GG D I+ RI D +++ P VL M + AALG ++ N ++A AIV P Y R+AR Sbjct: 118 SGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARG 177 Query: 181 EANVRRNAGFVQAARLSGNGEYRILLGHILPNIMPIMIVQMSLTMGYAILNAAGLSFIGL 240 +A V R +VQAA+ G + ++ HIL N +P +IVQ SL +G AIL AA L FIGL Sbjct: 178 QALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGL 237 Query: 241 GVRPPTAEWGIMVAEGAGFMVSGEWWIALFPGLALMIAVFCFNLLGDGLRDIVDPQ 296 G + P+AEWG MVA G +++ +WW FPG A+++ FNL GDG+RD++DP+ Sbjct: 238 GAQQPSAEWGAMVANGRNYVLD-QWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPK 292 >AGc4571 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 300 Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/267 (42%), Positives = 164/267 (61%), Gaps = 1/267 (0%) Query: 30 LSENKVTGFAFALLVLIVFAALFGPYVVPYDPLASDTAAALKPPSAAHWFGTDQLGRDIF 89 L N + ++VL + +L P + PYDP + L P+A HWFGTD+LGRDI Sbjct: 33 LKSNPLAVIGLTIIVLFIALSLLAPAIAPYDPATQNLGNRLAFPNAEHWFGTDELGRDIL 92 Query: 90 SRVIVATRLDTFIAVASVVLVFLMGGLAGIAAGYFGGWTDLIVGRIADTIMAFPLFVLAM 149 SR++ R+ + +A VVLV +G G AGYFGG D ++ R+ D +AFP +LA+ Sbjct: 93 SRILYGGRVTLGMVIAVVVLVAPIGLAIGCIAGYFGGIVDTVLMRVTDVFLAFPRLILAL 152 Query: 150 GIVAALGNTVQNIIIATAIVNFPLYARVARAEANVRRNAGFVQAARLSGNGEYRILLGHI 209 VAAL V++ I+A A+ +P YAR+ARAE R + FV A RL+G +RI+ HI Sbjct: 153 AFVAALKPGVESAILAIALTAWPPYARLARAETMTVRGSDFVAAYRLTGASAWRIIARHI 212 Query: 210 LPNIMPIMIVQMSLTMGYAILNAAGLSFIGLGVRPPTAEWGIMVAEGAGFMVSGEWWIAL 269 P +P +IV+++L M I+ AA L F+G+G +PP+ EWG M+A F+ +WW+A Sbjct: 213 APLCVPSLIVRITLDMSSIIITAASLGFLGMGAQPPSPEWGAMIATAKRFIFE-QWWVAT 271 Query: 270 FPGLALMIAVFCFNLLGDGLRDIVDPQ 296 PG+A+ + FN LGDGLRD++DP+ Sbjct: 272 IPGIAIFLVSLAFNFLGDGLRDVLDPK 298