BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0088.0001.p         (151 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM3557 [G] COG1653 ABC-type sugar transport system, periplasmic...   192   3e-49
ugpB [G] COG1653 ABC-type sugar transport system, periplasmic co...   188   4e-48
ZugpB [G] COG1653 ABC-type sugar transport system, periplasmic c...   188   4e-48
ECs4299 [G] COG1653 ABC-type sugar transport system, periplasmic...   188   4e-48
YPO3796 [G] COG1653 ABC-type sugar transport system, periplasmic...   186   2e-47

>STM3557 [G] COG1653 ABC-type sugar transport system, periplasmic component
           Sty Salmonella typhimurium LT2
          Length = 438

 Score =  192 bits (487), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 118/148 (79%)

Query: 1   MMPYEPDVQGAPQNSIIGGATLWVLRDRPRAEYAGVAKFFAYLSRPEVQAAWHQNTGYLP 60
           MMPY+ D++GAPQN+IIGGA+LWV++ + +  Y GVAKF  +L++PE  A WHQ TGYLP
Sbjct: 289 MMPYDADIKGAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLP 348

Query: 61  ITRAAFDLTRAQGFYDRNPGASISIEEVTLKPPTDHSKGIRLGSFVLIRDVIEEELEQVF 120
           IT AA++LTR QG+YD+NPGA I+  ++  KPP   +KG+RLG+   IR +++EELE V+
Sbjct: 349 ITTAAYELTREQGYYDKNPGADIATRQMLNKPPLPFTKGLRLGNMPQIRTIVDEELESVW 408

Query: 121 SGKRSAQAAMDNAVERGNRLLRQFERAN 148
           +GK++ Q A+D AV+RGN+LLR+FE+A+
Sbjct: 409 TGKKTPQQALDTAVDRGNQLLRRFEKAS 436


>ugpB [G] COG1653 ABC-type sugar transport system, periplasmic component
           Eco Escherichia coli K12
          Length = 438

 Score =  188 bits (477), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 82/147 (55%), Positives = 115/147 (78%)

Query: 1   MMPYEPDVQGAPQNSIIGGATLWVLRDRPRAEYAGVAKFFAYLSRPEVQAAWHQNTGYLP 60
           MMPY+ D + APQN+IIGGA+LWV++ + +  Y GVAKF  +L++PE  A WHQ TGYLP
Sbjct: 289 MMPYDADAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLP 348

Query: 61  ITRAAFDLTRAQGFYDRNPGASISIEEVTLKPPTDHSKGIRLGSFVLIRDVIEEELEQVF 120
           IT+AA+DLTR QGFY++NPGA  +  ++  KPP   +KG+RLG+   IR +++EELE V+
Sbjct: 349 ITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIVDEELESVW 408

Query: 121 SGKRSAQAAMDNAVERGNRLLRQFERA 147
           +GK++ Q A+D AVERGN+LLR+FE++
Sbjct: 409 TGKKTPQQALDTAVERGNQLLRRFEKS 435


>ZugpB [G] COG1653 ABC-type sugar transport system, periplasmic component
           EcZ Escherichia coli O157:H7 EDL933
          Length = 438

 Score =  188 bits (477), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 82/147 (55%), Positives = 115/147 (78%)

Query: 1   MMPYEPDVQGAPQNSIIGGATLWVLRDRPRAEYAGVAKFFAYLSRPEVQAAWHQNTGYLP 60
           MMPY+ D + APQN+IIGGA+LWV++ + +  Y GVAKF  +L++PE  A WHQ TGYLP
Sbjct: 289 MMPYDADAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLP 348

Query: 61  ITRAAFDLTRAQGFYDRNPGASISIEEVTLKPPTDHSKGIRLGSFVLIRDVIEEELEQVF 120
           IT+AA+DLTR QGFY++NPGA  +  ++  KPP   +KG+RLG+   IR +++EELE V+
Sbjct: 349 ITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIVDEELESVW 408

Query: 121 SGKRSAQAAMDNAVERGNRLLRQFERA 147
           +GK++ Q A+D AVERGN+LLR+FE++
Sbjct: 409 TGKKTPQQALDTAVERGNQLLRRFEKS 435


>ECs4299 [G] COG1653 ABC-type sugar transport system, periplasmic component
           Ecs Escherichia coli O157:H7
          Length = 438

 Score =  188 bits (477), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 82/147 (55%), Positives = 115/147 (78%)

Query: 1   MMPYEPDVQGAPQNSIIGGATLWVLRDRPRAEYAGVAKFFAYLSRPEVQAAWHQNTGYLP 60
           MMPY+ D + APQN+IIGGA+LWV++ + +  Y GVAKF  +L++PE  A WHQ TGYLP
Sbjct: 289 MMPYDADAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLP 348

Query: 61  ITRAAFDLTRAQGFYDRNPGASISIEEVTLKPPTDHSKGIRLGSFVLIRDVIEEELEQVF 120
           IT+AA+DLTR QGFY++NPGA  +  ++  KPP   +KG+RLG+   IR +++EELE V+
Sbjct: 349 ITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIVDEELESVW 408

Query: 121 SGKRSAQAAMDNAVERGNRLLRQFERA 147
           +GK++ Q A+D AVERGN+LLR+FE++
Sbjct: 409 TGKKTPQQALDTAVERGNQLLRRFEKS 435


>YPO3796 [G] COG1653 ABC-type sugar transport system, periplasmic component
           Ype Yersinia pestis
          Length = 439

 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 116/148 (78%)

Query: 1   MMPYEPDVQGAPQNSIIGGATLWVLRDRPRAEYAGVAKFFAYLSRPEVQAAWHQNTGYLP 60
           MMPY+ D + APQN+IIGGA+LWV+  + +  Y GVA+F  YL +PE+ A WHQ TGYLP
Sbjct: 291 MMPYDADAKNAPQNAIIGGASLWVMDGKDKETYKGVAEFLQYLVKPEIAAEWHQKTGYLP 350

Query: 61  ITRAAFDLTRAQGFYDRNPGASISIEEVTLKPPTDHSKGIRLGSFVLIRDVIEEELEQVF 120
           IT AA++LT+ QGFY++NPGA ++  ++  KPP  ++KG+RLG+   IR V++EELE V+
Sbjct: 351 ITTAAYELTKQQGFYEQNPGADVATRQMLNKPPLPYTKGLRLGNMPQIRTVVDEELEAVW 410

Query: 121 SGKRSAQAAMDNAVERGNRLLRQFERAN 148
           + K++ QAA+DN+V+RG+ LLR+FE+AN
Sbjct: 411 TAKKTPQAALDNSVKRGDVLLRRFEQAN 438