BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0034.p         (142 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF1490 [K] COG1846 Transcriptional regulators Xfa Xylella fastid...    72   4e-13

>XF1490 [K] COG1846 Transcriptional regulators Xfa Xylella fastidiosa 9a5c
          Length = 159

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 69/129 (53%)

Query: 1   VPAFITFIGNKLSNSATAFYQKNFGVNVTEWRIISQLAIEPGIPASRICQVIGFDKGPVS 60
           +P  I+ +   ++++    Y+  + +  TEW +I+ LA+ PG  AS++ +    DK  VS
Sbjct: 19  LPFRISLLSKHINDNIAKIYEHRYNMAATEWHVITILALYPGSSASKVSEHSAMDKVAVS 78

Query: 61  RNLAALQKRGLLTIRTAPDDGRTHSITLTARGRAIHDKVIVAALERERRLLACLKKDERE 120
           R +A L K   +   T  DD R   +TL+  G  +++ V     + + RL++ L + ER+
Sbjct: 79  RAVARLLKHHFIQRETHGDDRRRSMLTLSPIGHQVYETVAPLINDMKNRLMSVLSEKERQ 138

Query: 121 VLIELLRRL 129
           +L  L+ RL
Sbjct: 139 LLDHLIDRL 147