BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0016.p         (93 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SP0753 [E] COG0410 ABC-type branched-chain amino acid transport ...    87   1e-17
livF [E] COG0410 ABC-type branched-chain amino acid transport sy...    86   2e-17
ZlivF [E] COG0410 ABC-type branched-chain amino acid transport s...    86   2e-17
ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport...    86   2e-17
FN1428 [E] COG0410 ABC-type branched-chain amino acid transport ...    86   2e-17

>SP0753 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Spn Streptococcus pneumoniae TIGR4
          Length = 236

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 64/92 (69%)

Query: 1   MLAIGRALMTNPKLLILDEATEGLAPLIRDEIWSCLSMLKGRGQSVLVIDKNVGNLARIA 60
           MLA+GRALM+ PKLL+LDE + GLAP+   EI+  +  ++ +G +VL+I++N      I+
Sbjct: 144 MLAMGRALMSTPKLLLLDEPSMGLAPIFIQEIFDIIQDIQKQGTTVLLIEQNANKALAIS 203

Query: 61  DRHYIIERGKTVWSGTSEQLIAEPDLQHKYLG 92
           DR Y++E G+ V SGT ++L +  +++  YLG
Sbjct: 204 DRGYVLETGRIVLSGTGKELASSEEVRKAYLG 235


>livF [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Eco Escherichia coli K12
          Length = 241

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 63/92 (68%)

Query: 1   MLAIGRALMTNPKLLILDEATEGLAPLIRDEIWSCLSMLKGRGQSVLVIDKNVGNLARIA 60
           MLAIGRALM+NP+LL+LDE + GLAP+I  +I+  +  L+ +G ++ ++++N     ++A
Sbjct: 149 MLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLA 208

Query: 61  DRHYIIERGKTVWSGTSEQLIAEPDLQHKYLG 92
           DR Y++E G  V S T + L+A   ++  YLG
Sbjct: 209 DRGYVLENGHVVLSDTGDALLANEAVRSAYLG 240


>ZlivF [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component EcZ Escherichia coli O157:H7 EDL933
          Length = 241

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 63/92 (68%)

Query: 1   MLAIGRALMTNPKLLILDEATEGLAPLIRDEIWSCLSMLKGRGQSVLVIDKNVGNLARIA 60
           MLAIGRALM+NP+LL+LDE + GLAP+I  +I+  +  L+ +G ++ ++++N     ++A
Sbjct: 149 MLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLA 208

Query: 61  DRHYIIERGKTVWSGTSEQLIAEPDLQHKYLG 92
           DR Y++E G  V S T + L+A   ++  YLG
Sbjct: 209 DRGYVLENGHVVLSDTGDALLANEAVRSAYLG 240


>ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Ecs Escherichia coli O157:H7
          Length = 241

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 63/92 (68%)

Query: 1   MLAIGRALMTNPKLLILDEATEGLAPLIRDEIWSCLSMLKGRGQSVLVIDKNVGNLARIA 60
           MLAIGRALM+NP+LL+LDE + GLAP+I  +I+  +  L+ +G ++ ++++N     ++A
Sbjct: 149 MLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLA 208

Query: 61  DRHYIIERGKTVWSGTSEQLIAEPDLQHKYLG 92
           DR Y++E G  V S T + L+A   ++  YLG
Sbjct: 209 DRGYVLENGHVVLSDTGDALLANEAVRSAYLG 240


>FN1428 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Fnu Fusobacterium nucleatum
          Length = 237

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 61/92 (66%)

Query: 1   MLAIGRALMTNPKLLILDEATEGLAPLIRDEIWSCLSMLKGRGQSVLVIDKNVGNLARIA 60
           MLA+GRALM+ PKLLILDE + GL+PL   EI+  +  LK +G ++L++++N      I+
Sbjct: 145 MLAMGRALMSRPKLLILDEPSMGLSPLFVKEIFEVIKQLKEKGTTILLVEQNAKMALSIS 204

Query: 61  DRHYIIERGKTVWSGTSEQLIAEPDLQHKYLG 92
           DR Y+IE G+ V  G +E L+    ++  YLG
Sbjct: 205 DRAYVIETGEIVLEGKAEDLLYNDRVKKAYLG 236