BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0012.p         (80 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all4558 [PR] COG4638 Phenylpropionate dioxygenase and related ri...    74   1e-13
sll0264 [PR] COG4638 Phenylpropionate dioxygenase and related ri...    70   1e-12
alr5007 [PR] COG4638 Phenylpropionate dioxygenase and related ri...    65   4e-11
sll1849 [PR] COG4638 Phenylpropionate dioxygenase and related ri...    63   2e-10
all2097 [PR] COG4638 Phenylpropionate dioxygenase and related ri...    61   6e-10

>all4558 [PR] COG4638 Phenylpropionate dioxygenase and related
           ring-hydroxylating dioxygenases, large terminal subunit
           Nos Nostoc sp. PCC 7120
          Length = 363

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 41/68 (60%)

Query: 6   GPRPVRPVRLLGENLVLFRGEDGSYGLIDRHCAHRGADLAFGRLENGGLRCAFHGWLFDT 65
           G   V+ + LLG  LV++RG+D    + D +C H GA L  G +E   LRCAFH W F+T
Sbjct: 41  GINEVKSITLLGRKLVIYRGQDQQVAICDAYCPHMGAHLGEGTVEGNELRCAFHHWKFNT 100

Query: 66  SGQCIETP 73
            G C+E P
Sbjct: 101 DGICVEIP 108


>sll0264 [PR] COG4638 Phenylpropionate dioxygenase and related
           ring-hydroxylating dioxygenases, large terminal subunit
           Syn Synechocystis
          Length = 396

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 40/64 (62%)

Query: 10  VRPVRLLGENLVLFRGEDGSYGLIDRHCAHRGADLAFGRLENGGLRCAFHGWLFDTSGQC 69
           V+ V LLG++L ++R + G    +D +C H GA LA G++E   LRC FH W FD  G C
Sbjct: 71  VKAVFLLGKDLAVYRTDSGKVVAVDAYCPHMGAHLAEGKVEEESLRCFFHNWRFDHHGHC 130

Query: 70  IETP 73
           +E P
Sbjct: 131 VEVP 134


>alr5007 [PR] COG4638 Phenylpropionate dioxygenase and related
           ring-hydroxylating dioxygenases, large terminal subunit
           Nos Nostoc sp. PCC 7120
          Length = 450

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 37/65 (56%)

Query: 15  LLGENLVLFRGEDGSYGLIDRHCAHRGADLAFGRLENGGLRCAFHGWLFDTSGQCIETPA 74
           L  E  VLFR +DG  G +   C HR A L+ G++ +G + C +HGW F T GQC+  P 
Sbjct: 51  LYDEPFVLFRNQDGKLGCLPDICPHRAAKLSDGQIIDGKIECLYHGWQFGTDGQCLHIPQ 110

Query: 75  GPAGA 79
            P  A
Sbjct: 111 LPKEA 115


>sll1849 [PR] COG4638 Phenylpropionate dioxygenase and related
          ring-hydroxylating dioxygenases, large terminal subunit
          Syn Synechocystis
          Length = 211

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (61%)

Query: 11 RPVRLLGENLVLFRGEDGSYGLIDRHCAHRGADLAFGRLENGGLRCAFHGWLFDTSGQCI 70
          + + L G+ +V+FRGEDG    +  +C H G DL  G++E+  +RC FH W FD +G+C 
Sbjct: 29 KSLALCGQKIVVFRGEDGKARALHGYCPHLGTDLGLGQVEDSWIRCNFHRWAFDETGKCR 88

Query: 71 ETP 73
            P
Sbjct: 89 HIP 91


>all2097 [PR] COG4638 Phenylpropionate dioxygenase and related
           ring-hydroxylating dioxygenases, large terminal subunit
           Nos Nostoc sp. PCC 7120
          Length = 499

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 1   VDELDGPRPVRPVRLLGENLVLFRGEDGSYGLIDRHCAHRGADLAFGRLE-NGGLRCAFH 59
           V+ LD  RP   ++LLG+++VL+R     +   +  C HR A L+ GR+E +G L CA+H
Sbjct: 44  VEFLDPSRP-HAMQLLGKDIVLWRDGSSQWRCFEDFCPHRLAPLSEGRVEADGTLLCAYH 102

Query: 60  GWLFDTSGQCIETP 73
            W FD  G C+  P
Sbjct: 103 AWRFDAEGNCVSIP 116