BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0087.0010.p (261 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium... 191 1e-48 PA0155 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer... 184 2e-46 BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella mel... 181 1e-45 RSc2255 [K] COG1414 Transcriptional regulator Rso Ralstonia sola... 169 6e-42 AGl644 [K] COG1414 Transcriptional regulator Atu Agrobacterium t... 162 9e-40 >SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium meliloti Length = 251 Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 104/240 (43%), Positives = 149/240 (62%) Query: 12 RATDFVEALDRGLRLLQVFGTVSGPATLSDLARAADLPRATARRILFTLAHGGFVATDGK 71 R TDFV RGL++++ FG +++D A+ L RAT RR L TL+ G+ DGK Sbjct: 2 RETDFVSGFARGLKVIEAFGEAQPRLSIADAAKITGLDRATVRRSLLTLSQLGYADYDGK 61 Query: 72 LFTLTPHVLTLAGSFLQSNQVVTVLQPVLDRIATAAQEIASLALLDGDDVVFVARSSPTR 131 FTLTP L L ++L + + T++QP LD++A A + AS ++LDG ++V+VAR+S R Sbjct: 62 FFTLTPKTLRLGHAYLSATPLPTIVQPYLDQLAEKAGQSASASVLDGTEIVYVARASQRR 121 Query: 132 VFSAGLDIGYRLPAFCTSVGRAMLGRLTDAELAARLKAMRRDPVTSQTVTDPKKLLATII 191 V S L G RLPA+C S+GR +L L +AE L T T TDP++LL + Sbjct: 122 VMSINLTPGSRLPAYCASMGRVLLAALPEAEAREILGRSELKANTPLTRTDPEELLTELR 181 Query: 192 ADRAQGYSLVDREAEPHFRSISVPVHRYDGTIVAAINMGAHVDRVPAKELIDRFLPLLRE 251 R +GY+++D+E E SI+VPV G ++AA+N+GA VPA+E+ +RFLPLLRE Sbjct: 182 RVRDEGYAIIDQELELGLCSIAVPVANDRGQVLAALNIGASAAHVPAREMAERFLPLLRE 241 >PA0155 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 279 Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 99/248 (39%), Positives = 151/248 (60%), Gaps = 1/248 (0%) Query: 15 DFVEALDRGLRLLQVFGTVSGPATLSDLARAADLPRATARRILFTLAHGGFVATDGKLFT 74 +F+ +L RGL ++ F T++ ++ ++PRA RR L TL G+ TDG+ ++ Sbjct: 31 NFMTSLARGLAVIHAFQERKRHLTIAQISHRTEIPRAAVRRCLHTLMQLGYATTDGRTYS 90 Query: 75 LTPHVLTLAGSFLQSNQVVTVLQPVLDRIATAAQEIASLALLDGDDVVFVARS-SPTRVF 133 L P VLTL ++L S + QP+LDR++ E S+A L+GDDV+++ARS +P R+ Sbjct: 91 LLPKVLTLGHAYLSSTPLAITAQPILDRLSEQLHEACSMATLEGDDVLYIARSATPQRLI 150 Query: 134 SAGLDIGYRLPAFCTSVGRAMLGRLTDAELAARLKAMRRDPVTSQTVTDPKKLLATIIAD 193 S L++G RLPA+CTS+GR +L L D L A + TS+T+ P+ LL ++ Sbjct: 151 SVDLNVGSRLPAYCTSMGRILLAALDDDALHAYFGGVEMQAKTSRTLYTPETLLPCLVEI 210 Query: 194 RAQGYSLVDREAEPHFRSISVPVHRYDGTIVAAINMGAHVDRVPAKELIDRFLPLLREGA 253 R QG+ +VD+E E RS++VPV G ++AA+N+G H RV EL RFLPLL E + Sbjct: 211 RRQGWCIVDQELEVGLRSLAVPVRDSAGHVLAALNVGTHAGRVSRAELESRFLPLLLEAS 270 Query: 254 EDVKSRLL 261 ++ +RL Sbjct: 271 RELSARLF 278 >BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella melitensis Length = 256 Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/249 (39%), Positives = 151/249 (60%) Query: 12 RATDFVEALDRGLRLLQVFGTVSGPATLSDLARAADLPRATARRILFTLAHGGFVATDGK 71 R TDFV +GLR+++ FG +++D+++ L RATARR L TLA G+ DGK Sbjct: 2 RETDFVGGFAKGLRVIEAFGEDRPRLSIADVSKITGLDRATARRCLLTLAELGYAEYDGK 61 Query: 72 LFTLTPHVLTLAGSFLQSNQVVTVLQPVLDRIATAAQEIASLALLDGDDVVFVARSSPTR 131 F L P +L L ++L + T++QP LDR++ + E AS ++LDG ++V++AR+S R Sbjct: 62 FFMLLPRILRLGHAYLSGTPLPTIIQPHLDRLSQSVGESASASVLDGAEIVYIARASQMR 121 Query: 132 VFSAGLDIGYRLPAFCTSVGRAMLGRLTDAELAARLKAMRRDPVTSQTVTDPKKLLATII 191 V S L G RLPA+C S+GR +L L ++E L+ T T DP+KL+ + Sbjct: 122 VISINLMAGSRLPAYCASMGRVLLAWLDESEARTILEQTELRARTPFTQKDPEKLMEELR 181 Query: 192 ADRAQGYSLVDREAEPHFRSISVPVHRYDGTIVAAINMGAHVDRVPAKELIDRFLPLLRE 251 RAQG+++ D+E E RSI+VPV + G +VAA+N+GA V V +L+ R LP + + Sbjct: 182 RIRAQGFAVNDQELELGLRSIAVPVFNHRGAVVAALNIGAPVAHVEVSDLVGRILPEMLK 241 Query: 252 GAEDVKSRL 260 +++S L Sbjct: 242 IQSELRSML 250 >RSc2255 [K] COG1414 Transcriptional regulator Rso Ralstonia solanacearum Length = 275 Score = 169 bits (428), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 92/249 (36%), Positives = 146/249 (58%), Gaps = 1/249 (0%) Query: 11 ERATD-FVEALDRGLRLLQVFGTVSGPATLSDLARAADLPRATARRILFTLAHGGFVATD 69 E+ +D +V++ RGL +++ F TLS++A A L RA ARRIL TL G+V+ + Sbjct: 21 EKPSDSYVQSFARGLSVIRAFNAERPAQTLSEVAEATGLTRAGARRILLTLVSLGYVSFE 80 Query: 70 GKLFTLTPHVLTLAGSFLQSNQVVTVLQPVLDRIATAAQEIASLALLDGDDVVFVARSSP 129 G+LF LTP +L L ++L S + +PV++ + E S ++LDG ++V+V R Sbjct: 81 GRLFRLTPRILDLGFAYLTSMPFWNLAEPVMEELVQTVHESCSASVLDGTEIVYVLRVPT 140 Query: 130 TRVFSAGLDIGYRLPAFCTSVGRAMLGRLTDAELAARLKAMRRDPVTSQTVTDPKKLLAT 189 ++ + L +G RLPAFCTS+GR +L L + L L+ R P T +T+T+ L Sbjct: 141 QKIIALNLSVGSRLPAFCTSMGRVLLSGLPEDRLDIVLRESDRRPRTQRTITEVDALKDV 200 Query: 190 IIADRAQGYSLVDREAEPHFRSISVPVHRYDGTIVAAINMGAHVDRVPAKELIDRFLPLL 249 I RAQG++LVD+E E S+S P+ G I+AA+N+ +R A+++ +FL L Sbjct: 201 IAGVRAQGWALVDQELEEGLISLSTPIRNRAGDIIAAMNISGQANRTSARQMTRQFLGPL 260 Query: 250 REGAEDVKS 258 ++ AE + S Sbjct: 261 QQAAERISS 269 >AGl644 [K] COG1414 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 269 Score = 162 bits (409), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 96/239 (40%), Positives = 141/239 (58%), Gaps = 8/239 (3%) Query: 15 DFVEALDRGLRLLQVFGTVSGPATLSDLARAADLPRATARRILFTLAHGGFVATDGKLFT 74 D + L +GLR+++ F ++SD A A L RAT RR L TL+ G+ A DGK FT Sbjct: 23 DMMGGLAKGLRVIEAFSAERPRLSISDAAEIAGLDRATTRRCLLTLSELGYAAYDGKFFT 82 Query: 75 LTPHVLTLAGSFLQSNQVVTVLQPVLDRIATAAQEIASLALLDGDDVVFVARSSPTRVFS 134 +TP VL L L + + ++QP+LDR++ + S+++LD ++V+VAR++ RV S Sbjct: 83 VTPKVLRLGTGCLATMPLPKIVQPLLDRLSEEIGQSTSVSILDEAEIVYVARAAQQRVMS 142 Query: 135 AGLDIGYRLPAFCTSVGRAMLGRLTDAELAAR----LKAMRRDPVTSQTVTDPKKLLATI 190 L G RLPA+CTS+GR +L A+ A R L+A R T +T+TD LLA I Sbjct: 143 IALMPGSRLPAYCTSMGRVLLA----AQPAERRRDILEASRLVARTEKTITDMDALLAEI 198 Query: 191 IADRAQGYSLVDREAEPHFRSISVPVHRYDGTIVAAINMGAHVDRVPAKELIDRFLPLL 249 +GY+L+D+E E RSI+VP+ G VAA+N+G +EL++R+LP L Sbjct: 199 EVTGHRGYALIDQEVEIGLRSIAVPLKTVRGQTVAALNVGLAASVASMEELVERYLPAL 257