BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0085.0025.p         (242 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpA140 [S] COG2135 Uncharacterized conserved protein Atu Agroba...   221   1e-57
mll7390 Non COG                                                       189   6e-48
VNG0686C [S] COG2135 Uncharacterized conserved protein Hbs Halob...    60   4e-09
all3194 [S] COG2135 Uncharacterized conserved protein Nos Nostoc...    59   9e-09

>AGpA140 [S] COG2135 Uncharacterized conserved protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 257

 Score =  221 bits (562), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 119/237 (50%), Positives = 157/237 (66%), Gaps = 8/237 (3%)

Query: 1   VCNLYSMTKNVDAIRRLFGALNSNVGNLPSMPGIFPDYPAPIVRNGAEGR-EIVMARWGM 59
           +CNLY M ++ D + +      S +  +P+   + PD   PIVRN A+G+ ++V ARWG+
Sbjct: 1   MCNLYRM-EDKDWVSKWAQDAESLINLMPAY-QMNPDQMGPIVRNTADGKKQLVHARWGL 58

Query: 60  PSSQRALMDATKKRAEKLQAKGKTVDFKELLRMEPDGGTTNIRNVSSAHWKRWLGPEHRC 119
           PS       A + RA+KL+AKGK  D  EL+RMEPD G TN+R ++  HW RW G EHRC
Sbjct: 59  PSPIFVQKKAAEARADKLKAKGKAFDINELIRMEPDRGVTNVRKLNLPHWTRWFGVEHRC 118

Query: 120 LVPFTSFSEYD---TIDGKKVP-VWFALDEARPLIAFAGLWT-NWTSVRKAKEGEITTDV 174
           LVP TSF+E D     +G  VP  WFA DEA+ L+ FAG+    W SVRK ++G  T D+
Sbjct: 119 LVPVTSFAEPDPASKQEGGNVPNAWFARDEAKSLMFFAGIHVPQWKSVRKVRDGLTTDDL 178

Query: 175 FGFLTCEPNAEVKRVHPKAMPVILATPEEYEVWLRAPWDEAKSLQRPLPDGALRIVA 231
           +GFLT +PN  VK +H KAMPV+L T EE E+W+RAPWDEAK L RPLP+ AL I++
Sbjct: 179 YGFLTTDPNDLVKPIHEKAMPVLLLTREETEIWMRAPWDEAKHLARPLPNDALIILS 235


>mll7390 Non COG
          Length = 234

 Score =  189 bits (479), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 103/238 (43%), Positives = 136/238 (57%), Gaps = 32/238 (13%)

Query: 1   VCNLYSMTKNVDAIRRLFGALNSNVGNLPSMPGIFPDYPAPIVRNGAEG-REIVMARWGM 59
           +CNLY++T   +A+R+   AL    GNL     I+P+ P P+VRN A+G RE+    WG+
Sbjct: 1   MCNLYNITTTQEAVRQWTRALRDLSGNLEPSVDIYPNQPGPVVRNTADGKRELAKLLWGL 60

Query: 60  PSSQRALMDATKKRAEKLQAKGKTVDFKELLRMEPDGGTTNIRNVSSAHWKRWLGPEHRC 119
           P+             E+++ K              D GTTN+RN   +HW++++G EHRC
Sbjct: 61  PTP-----------PERMKGKA-------------DYGTTNVRNPQYSHWQQFVGVEHRC 96

Query: 120 LVPFTSFSEYDTIDGKKVP-------VWFALDEARPLIAFAGLWTNWTSVRKAKEGEITT 172
           +VP TSF+E       K P        WFA DE+RPL  FAG WT W  VRK K+G    
Sbjct: 97  VVPVTSFAEPSPTPSDKDPDTGIQRNYWFARDESRPLFFFAGFWTRWQGVRKVKDGPGDF 156

Query: 173 DVFGFLTCEPNAEVKRVHPKAMPVILATPEEYEVWLRAPWDEAKSLQRPLPDGALRIV 230
           ++F F+T +PNA +  +H KAMPVIL T EE E WL APW EA+ LQR  PD AL IV
Sbjct: 157 ELFAFMTTKPNALIAPIHEKAMPVILTTSEETEAWLTAPWAEARHLQRTAPDNALVIV 214


>VNG0686C [S] COG2135 Uncharacterized conserved protein Hbs Halobacterium sp.
           NRC-1
          Length = 229

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 42/220 (19%)

Query: 1   VCNLYSMTKNVDAIRRLFGALNSNVGNLPSMPGIFPDYPAPIVRNGAEGREIVMARWGMP 60
           +C  Y++    + +R  FG   + V   P+     P    P++ +  E  E V ARWG+ 
Sbjct: 1   MCGRYALFSTPETLRETFGLTTAPVE--PTY-NAAPSQSLPVILD-TEPTETVRARWGLV 56

Query: 61  SSQRALMDATKKRAEKLQAKGKTVDFKELLRMEPDGGTTNIRNVSSAHWKRWLGPEHRCL 120
            S     D  +   + + A+ +T+              T  R+  +A+  R      RCL
Sbjct: 57  PS---WSDGPQSAPDPINARAETL--------------TETRHFQAAYEHR------RCL 93

Query: 121 VPFTSFSEYDTIDGKKVPVWFALDEARPLIAFAGLWTNWTSVR-KAKEGEITTD------ 173
           VP   F E+   DG  VP + +  +  P +  AGLW  WT  + +   GE T D      
Sbjct: 94  VPVDGFYEWRDEDGATVPYFVSRTDGAPFL-LAGLWETWTPEQTQTGLGEFTGDDGPSRD 152

Query: 174 -----VFGFLTCEPNAEVKRVHPKAMPVILATPEEYEVWL 208
                 F  +T +PNA +   H + M V+L TP + + WL
Sbjct: 153 PETVRSFTVVTTQPNAFLADYHHR-MAVVL-TPAQGQRWL 190


>all3194 [S] COG2135 Uncharacterized conserved protein Nos Nostoc sp. PCC
           7120
          Length = 233

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 37/225 (16%)

Query: 1   VCNLYSMTKNVDAIRRLFGALNSNVGNLPSMPGIFPDYPAPIVRNGAEG--REIVMARWG 58
           +C  +++T++ +A+   F      + +L +   I P      V +  E   RE    RWG
Sbjct: 1   MCGRFTLTQSPEALAEFFHI--QPLLDLEAQYNIAPTQTVVTVLHNPESNKREFQRLRWG 58

Query: 59  M-PSSQRALMDATKKRAEKLQAKGKTVDFKELLRMEPDGGTTNIRNVSSAHWKRWLGPEH 117
           + PS  +    A+K     + A+ +T+  K   R              SA  +R      
Sbjct: 59  LIPSWAKDPAIASKL----INARAETLAEKPSFR--------------SAFKQR------ 94

Query: 118 RCLVPFTSFSEYDTIDGKKVPVWFALDEARPLIAFAGLWTNWTSVRKAKEGEITTDVFGF 177
           RCLV    F E+    GKK P +F L  ++P   FAGLW  W   R     EIT+     
Sbjct: 95  RCLVVADGFFEWQKQQGKKQPFYFRLQHSQPF-GFAGLWEKW---RTPAGEEITSCT--I 148

Query: 178 LTCEPNAEVKRVHPKAMPVILATPEEYEVWLRAPWDEAKSLQRPL 222
           +T   N  ++ +H + MPVILA P++Y++WL     + ++LQ  L
Sbjct: 149 VTTAANELLQPIHDR-MPVILA-PQDYDLWLDPQEQKPQALQHLL 191