BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0085.0002.p (422 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3400 [G] COG2814 Arabinose efflux permease Rso Ralstonia sola... 191 2e-48 BS_ydhL [G] COG2814 Arabinose efflux permease Bsu Bacillus subtilis 91 7e-18 BS_yceJ [G] COG2814 Arabinose efflux permease Bsu Bacillus subtilis 84 6e-16 mlr2471 Non COG 82 2e-15 L131423 [G] COG2814 Arabinose efflux permease Lla Lactococcus la... 81 5e-15 >RSc3400 [G] COG2814 Arabinose efflux permease Rso Ralstonia solanacearum Length = 421 Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 197/354 (55%), Gaps = 6/354 (1%) Query: 21 RYQSFLIALLAFTQFTLILDFIIMSPLGAILMPSLNITAGQFGVAVSAYAFAAGISGVLA 80 +++ L+ LLA TQFT+I+DF++M PLG +M + I F AVSAY++ +G SG+LA Sbjct: 7 QHERRLLWLLALTQFTIIMDFMVMMPLGPQIMHTFGIGPAAFAAAVSAYSWCSGASGLLA 66 Query: 81 AGFADRFDRKRLLLFFYVGFVLGTVLCALAQNFHVLLLGRIVTGIFGGVIGSVVLAIVTD 140 A + DRFDR+RLLL Y F L + CALA F +LL R G+ GGV+G+V+LAIV+D Sbjct: 67 ATYIDRFDRRRLLLTVYALFSLSNLACALAGTFPLLLAARAFAGLSGGVLGAVILAIVSD 126 Query: 141 LFPLQQRGRAMGVLQTAFAASQVLGVPAGLFLANHWNWHICFVAIVGLSIAAIAAIAIAM 200 + P +RG A GV+ ++FA + V GVP G+ L H W F + L+ + Sbjct: 127 VVPPARRGAATGVIMSSFALAAVAGVPIGIALGAHLGWAAPFFLLTALTALFWLGARQTV 186 Query: 201 QPVDAHLKLQHDSNPFRHLIATVGQ----PRYTLAFLVTTLLATGGFMLMPFGSAFTVHN 256 P+ AHL+ D + ++ + Q P + AF++T ++ + M++PF S V N Sbjct: 187 PPLTAHLR--EDGHSLGQILGGLWQLLTHPHHLRAFVLTFVMMSSHMMVIPFISPVLVAN 244 Query: 257 LGIDIVHLPTIYLVSGLFSIIIGPLVGRASDAFGKYPTFAFGCVVTVIMVLIYTNLGHVS 316 GI L +Y+ G + VGR +D +G+ F +++ I VL+ T+L Sbjct: 245 HGIAPQDLSWLYVAGGAATFFTSRAVGRLADRYGRRRVFVAAALLSFIPVLVMTHLPAWP 304 Query: 317 LLTAIVVNVLMFIGIFSRMIPSQALMSAIPDASQRGSFSAVSASVQQLSGGLGS 370 + ++ + + SRM+P QALM+ +P RG+F + + +V + G G+ Sbjct: 305 FIGMLLFFPCFMVILSSRMVPMQALMTTVPAPQVRGAFLSANNAVMSIGTGCGA 358 >BS_ydhL [G] COG2814 Arabinose efflux permease Bsu Bacillus subtilis Length = 425 Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 8/238 (3%) Query: 57 ITAGQFGVAVSAYAFAAGISGVLAAGFADRFDRKRLLLFFYVGFVLGTVLCALAQNFHVL 116 ++AGQ +S +A +SG L + +RKRL L F L ++ + NF L Sbjct: 75 VSAGQL---ISVFALGYAVSGPLLLALTAKIERKRLYLIALFVFFLSNLVAYFSPNFATL 131 Query: 117 LLGRIVTGIFGGVIGSVVLAIVTDLFPLQQRGRAMGVLQTAFAASQVLGVPAGLFLANHW 176 ++ R++ + G+I + L I + + R RA+G++ F+++ LGVP G+ +++ + Sbjct: 132 MVSRVLAAMSTGLIVVLSLTIAPKIVAPEYRARAIGIIFMGFSSAIALGVPLGILISDSF 191 Query: 177 NWHICFVAIVGLSIAAIAAIAIAMQPVDAHLKLQHDSNPFRHLIATVGQPRYTLAFLVTT 236 W I F+ I L++ ++ I+I + + A + PFR + T+G + + LVT Sbjct: 192 GWRILFLGIGLLALISMLIISIFFERIPAEKMI-----PFREQLKTIGNLKIASSHLVTM 246 Query: 237 LLATGGFMLMPFGSAFTVHNLGIDIVHLPTIYLVSGLFSIIIGPLVGRASDAFGKYPT 294 G + L + + F L + + Y + G+ ++ GP G SD G + + Sbjct: 247 FTLAGHYTLYAYFAPFLEETLHLSSFWVSICYFLFGISAVCGGPFGGALSDRLGSFKS 304 >BS_yceJ [G] COG2814 Arabinose efflux permease Bsu Bacillus subtilis Length = 390 Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 8/235 (3%) Query: 63 GVAVSAYAFAAGISGVLAAGFADRFDRKRLLLFFYVGFVLGTVLCALAQNFHVLLLGRIV 122 G VSAYA + +A +DR +RK ++L+ GF++ T LC +A +F + L R Sbjct: 40 GWMVSAYALGYALFAFIAGPISDRLNRKTVMLWGLAGFIVSTFLCGIAPSFAAMCLFRFA 99 Query: 123 TGIFGGVIGSVVLAIVTDLFPLQQRGRAMGVLQTAFAASQVLGVPAGLFLANHWNWHICF 182 G+ + + A + + Q + MG+ AASQ+LG+P G FLA+ + WH F Sbjct: 100 AGVSAAFVTPQIWASIPVIVQPSQIIKGMGIATAGLAASQMLGLPIGGFLAS-FTWHTPF 158 Query: 183 VAIVGLSIAAIAAIAIAMQPVDAHLKLQHDS--NPFRHLIATVGQPRYTLAFLVTTLLAT 240 + S+ + +A M + L S NP+R L + P+ ++ L L T Sbjct: 159 FVLSACSLILLLILAAVMPGIRPSEPLARPSIVNPYRELFSL---PKTSVILLAYFLFQT 215 Query: 241 GGFMLMPFGSAFTVHNLGIDIVHLPTIYLVSGLFSIIIGPLVG-RASDAFGKYPT 294 G F F + + + + + LV GL + ++G L+G R S+ G + T Sbjct: 216 GNFASFSFLGTWLSADYHLTVSQIGAAMLVLGLGN-MLGSLIGSRVSEKLGMFKT 269 >mlr2471 Non COG Length = 394 Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 107/233 (45%), Gaps = 3/233 (1%) Query: 55 LNITAGQFGVAVSAYAFAAGISGVLAAGFADRFDRKRLLLFFYVGFVLGTVLCALAQNFH 114 L ++ G VS YA I G L A RK LLL + F +G CALA +F Sbjct: 33 LGVSVPSAGYLVSGYACGIAIGGPLLALVTKSLPRKTLLLGLAIAFTIGQAACALAPDFT 92 Query: 115 VLLLGRIVTGIFGGVIGSVVLAIVTDLFPLQQRGRAMGVLQTAFAASQVLGVPAGLFLAN 174 +LL RI + G V + + L P +RG A+ V+ + S V+GVPAG + N Sbjct: 93 SMLLLRIAVAVAHGAYFGVAMVVAVGLVPEDKRGMAVAVILSGLTVSNVIGVPAGTAIGN 152 Query: 175 HWNWHICFVAIVGLSIAAIAAIAIAMQPVDAHLKLQHDSNPFRHLIATVGQPRYTLAFLV 234 W W F + L +AA A+A A+ P A Q + + + + + + ++ Sbjct: 153 IWGWRATFWVMCALGVAATCAMA-ALLPRTAG--YQAEPAGLAREVRVLARQQVWTSLIL 209 Query: 235 TTLLATGGFMLMPFGSAFTVHNLGIDIVHLPTIYLVSGLFSIIIGPLVGRASD 287 +L G F L + + + G+D +P + L++G+ + + L G+ SD Sbjct: 210 MLMLMLGQFCLFTYITPTLLEVTGLDEGLVPWVLLLNGVGATLGVFLGGKLSD 262 >L131423 [G] COG2814 Arabinose efflux permease Lla Lactococcus lactis Length = 393 Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 7/175 (4%) Query: 51 LMP----SLNITAGQFGVAVSAYAFAAGISGVLAAGFADRFDRKRLLLFFYVGFVLGTVL 106 LMP + NI+ Q G+ VS YA + L ++RK L++ F+LG +L Sbjct: 30 LMPMIVNTFNISLSQAGLTVSLYALGVTVGAPLLTILTGTWNRKTLMVSIMGLFILGNLL 89 Query: 107 CALAQNFHVLLLGRIVTGIFGGVIGSVVLAIVTDLFPLQQRGRAMGVLQTAFAASQVLGV 166 A A F +LL+GR++ + G+ S+ I D+ ++R A+ ++ T + V+GV Sbjct: 90 SAFAPTFLLLLVGRVLASLAHGIFMSISTVIAADVVRPEKRASAIALMFTGLTVATVIGV 149 Query: 167 PAGLFLANHWNWHICFVAIVGLSIAAIAAIAIAMQ---PVDAHLKLQHDSNPFRH 218 P G F+ H NWH+ FV IV + + + A +I + P+ + L + F + Sbjct: 150 PLGTFIGQHSNWHMSFVFIVVIGLIGLIATSILVPKGLPIPGKINLSGLARIFTN 204