BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0053.p (383 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEI1930 [E] COG0683 ABC-type branched-chain amino acid transpor... 87 4e-17 AGc4134 [E] COG0683 ABC-type branched-chain amino acid transport... 82 2e-15 RSp1592 [E] COG0683 ABC-type branched-chain amino acid transport... 78 3e-14 DR1038 [E] COG0683 ABC-type branched-chain amino acid transport ... 77 9e-14 PA4913 [E] COG0683 ABC-type branched-chain amino acid transport ... 74 4e-13 >BMEI1930 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 368 Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 6/229 (2%) Query: 3 AASFSFPAPAIAQSEPIKIGCLAAITGPSSAPTVGFNRGVNFAVDAINGAGGVKGRKIEL 62 AA+ F + A A I IG +A +TGP +A +G AV+ IN AGG+KG K+ L Sbjct: 12 AATIGFASAAYAD---ITIGVIAPLTGPVAAFGDQVKKGAETAVEVINKAGGIKGEKVVL 68 Query: 63 VMRDTQGDPTKAVNATQELISQAKVHAIWGPLNSGEALATTPIMARAKMPDLHPCVVETL 122 D G+P + V+A +++ + + G + +G A+ + +++ + + P Sbjct: 69 KFADDAGEPKQGVSAANQIVGDG-IKFVVGLVTTGVAVPVSDVLSENGVLMVTPTATGPD 127 Query: 123 IDPVKFPNAFRIAPSNNQWDDAVRNYCLKILKVKKVAVIGDTTGYGVTAVGASVAAFKKD 182 + N FR + Q + + +Y LK +K KKVAVI D YG A AA K Sbjct: 128 LTARGLENVFRTCGRDGQQAEVMADYVLKNMKDKKVAVIHDKGAYGKGLADAFKAAINKG 187 Query: 183 GAEVAYQANIDATQPDMTPDMLRAKNAGAEAIVV--WSVSTGMEARMFN 229 G + ++ D + + + K+AGAE + + G+ +R + Sbjct: 188 GITEVHYDSVTPGDKDFSALVTKLKSAGAEVVYFGGYHAEGGLLSRQLH 236 >AGc4134 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 368 Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 4/166 (2%) Query: 3 AASFSFPAPAIAQSEPIKIGCLAAITGPSSAPTVGFNRGVNFAVDAINGAGGVKGRKIEL 62 AASF+F AP +A +E I IG +A +TGP +A G AV IN GG+ G ++ L Sbjct: 12 AASFAF-AP-LAHAE-IVIGLIAPLTGPVAAYGDQVKNGAQTAVSEINKKGGILGEQVVL 68 Query: 63 VMRDTQGDPTKAVNATQELISQAKVHAIWGPLNSGEALATTPIMARAKMPDLHPCVVETL 122 + D G+P + V+A +L+++ +H + GP+ SG A+ + + A + + P Sbjct: 69 KLADDGGEPKQGVSAANQLVAEG-IHFVVGPVTSGVAIPASDVFAENGVLMVTPTATAPG 127 Query: 123 IDPVKFPNAFRIAPSNNQWDDAVRNYCLKILKVKKVAVIGDTTGYG 168 + N FR ++Q + Y L LK KK+A+I D YG Sbjct: 128 LTNRGLSNVFRTCGRDDQQAEVAAKYVLANLKGKKIAIIHDKGAYG 173 >RSp1592 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 380 Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 99/209 (47%), Gaps = 20/209 (9%) Query: 9 PAPAIAQSEP-IKIGCLAAITGPSSAPTVGFNRGVNFAVDAINGAGGVKGRK---IELVM 64 PA AQ+E ++IG +TG ++ G AV+ +N G V G K EL+ Sbjct: 21 PAVGWAQAEQTVRIGNAGPLTGGAAHWGKDNENGARLAVEDLNRKGLVIGGKKVRFELLS 80 Query: 65 RDTQGDPTKAVNATQELISQAKVHAIWGPLNSGEALATTPIMARAKMPDLHPCVVETLID 124 D Q DP +A+ +L+ V A+ G NSG A+ + I ARA +PD+ L Sbjct: 81 EDDQADPRQAMVVANKLVDSG-VKAMLGHFNSGAAIPASAIYARAGIPDISVATNPQLTQ 139 Query: 125 PVKFPNAFRIAPSNNQWDDAVRNYCLKILKVKKVAVIGDTTGY----------GVTAVGA 174 F N FRI S++ A+ + + L KKVA+I D T Y GV +GA Sbjct: 140 Q-GFRNTFRIIASDDDVGAALSRFAVTTLNAKKVAIIDDRTAYGQGAAEVFEKGVKGLGA 198 Query: 175 SVAA--FKKDGAE--VAYQANIDATQPDM 199 SV + F D A +A +I T+PD+ Sbjct: 199 SVVSQQFTSDKATDFMAILTSIKRTRPDV 227 >DR1038 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Dra Deinococcus radiodurans Length = 393 Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 1/236 (0%) Query: 19 IKIGCLAAITGPSSAPTVGFNRGVNFAVDAINGAGGVKGRKIELVMRDTQGDPTKAVNAT 78 +KI ++ ++G SS + G AV+ G + LV D Q DP A Sbjct: 34 VKIATISPLSGSSSNLGLQIKNGAQLAVNEYKAEFAKLGMNLSLVAYDDQADPATGTAAA 93 Query: 79 QELISQAKVHAIWGPLNSGEALATTPIMARAKMPDLHPCVVETLIDPVKFPNAFRIAPSN 138 + +++ V A+ G LN+G A+ + ++ +K+ + P T + N RI + Sbjct: 94 RRVVADKNVLAVVGTLNTGVAIPASQALSTSKVAMVSPANTGTKVTDRGLKNMNRICARD 153 Query: 139 NQWDDAVRNYCLKILKVKKVAVIGDTTGYGVTAVGASVAAFKKDGAEVAYQANIDATQPD 198 + A ++ + LKVKKV VI D T YG G + K G ++ + A + D Sbjct: 154 DAQGPAGADFMVSTLKVKKVYVINDKTPYGEGLSGEAEKRLKAKGVQIVQSEGVAAEERD 213 Query: 199 MTPDMLRAKNAGAEAIVVWSVSTGMEARMFNTRAAMNWDVPFVGHPSMASGELASL 254 T + + + +AI + G A VP +G M S ELA L Sbjct: 214 FTAIITKIQTLKPDAIYFGGL-YGQIGPFAQQLRAKGVQVPLIGGDGMDSDELAKL 268 >PA4913 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Pae Pseudomonas aeruginosa Length = 374 Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 4/192 (2%) Query: 27 ITGPSSAPTVGFN----RGVNFAVDAINGAGGVKGRKIELVMRDTQGDPTKAVNATQELI 82 + GP + F RG + A + IN AGG+ G KI+LV D +P +AV L+ Sbjct: 33 VAGPHTGANASFGEQYWRGASQAAEDINAAGGINGEKIKLVKADDACEPKQAVAVANRLV 92 Query: 83 SQAKVHAIWGPLNSGEALATTPIMARAKMPDLHPCVVETLIDPVKFPNAFRIAPSNNQWD 142 Q K A+ G S + + + A + + P + FR+ ++Q Sbjct: 93 DQDKAIAVVGHFCSSSTIPASEVYDEAGIIAITPGSTNPQVTERGLSGMFRMCGRDDQQG 152 Query: 143 DAVRNYCLKILKVKKVAVIGDTTGYGVTAVGASVAAFKKDGAEVAYQANIDATQPDMTPD 202 +Y + +LK KKVAVI D YG A+ A K G + + + D Sbjct: 153 VVAGDYIVNVLKAKKVAVIHDKDTYGQGLADATRAQLNKLGVKEVLYEGLTRGEKDFNAL 212 Query: 203 MLRAKNAGAEAI 214 + + + +GAE + Sbjct: 213 VTKIRASGAEVV 224