BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0023.p (304 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2510 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 231 2e-60 PA5029 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 215 1e-55 BS_alsR [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis 212 1e-54 DRA0336 [K] COG0583 Transcriptional regulator Dra Deinococcus ra... 204 3e-52 AGl1663 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 203 4e-52 >PA2510 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 290 Score = 231 bits (589), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 139/292 (47%), Positives = 187/292 (64%), Gaps = 5/292 (1%) Query: 1 MELRHLRYFVALGEELNFTRAAERLHIAQPPLSQQIRQLEDELGVTLLQRNSRPVRLTEA 60 MELRHLRYF AL LNFTRAAE+LHIAQPPLS+QI+QLE+ LGV LL+R RP+RLTEA Sbjct: 1 MELRHLRYFQALARTLNFTRAAEQLHIAQPPLSRQIQQLEEMLGVALLERG-RPLRLTEA 59 Query: 61 GELLLARARSLLANFEDAVADTRRVGRGQAGRLAIGFVGSAMFAGLPDLIGSYRDACPDV 120 G ++ +LL E TRR+G+GQ IGFV SA++ LP+LI R P++ Sbjct: 60 GRFFHEQSATLLDQLESICDSTRRIGQGQRQWFGIGFVPSALYGVLPELIRHLR-GDPEL 118 Query: 121 ELVLDEMLAAEIAEALRRRRIDVGFARPALVPEAGLAQRLILEEPYVAALPRAHPLAERD 180 EL L EM + EAL+ RID+GF R + + + Q ++ EEP VAALP HPL + Sbjct: 119 ELGLLEMTTLQQVEALKSGRIDIGFGR-IRIDDPAIRQSVLSEEPLVAALPAGHPLLGQ- 176 Query: 181 DIALAELSDDAFVLYPARPEPSVTGLIVAACQAAGFTPRLAQEVLHLQTAIGLIAAGVGV 240 ++L LS + FVLYP +P PS ++A G + R+ Q +QTAIGL+AAG+G Sbjct: 177 PLSLERLSREPFVLYPGQPRPSYADHVLALFATHGLSLRVTQWANEMQTAIGLVAAGLGA 236 Query: 241 SLVPEAAARAQTGRGVAYVRLAAPAVTAPLTIAWRDEDVSPAVQRLLDLVTR 292 +LVP A+ + Q VAY LA ++T+P+ ++ R D SP ++R L L+ R Sbjct: 237 TLVP-ASVQLQHRDDVAYQALADASLTSPIIVSRRQGDGSPHLRRCLALIGR 287 >PA5029 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 301 Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/295 (43%), Positives = 178/295 (60%), Gaps = 5/295 (1%) Query: 1 MELRHLRYFVALGEELNFTRAAERLHIAQPPLSQQIRQLEDELGVTLLQRNSRPVRLTEA 60 MELRHLRYF+A+ EEL+F RAAERL I+QPPLSQQI+ LE+E+G L +R +R V LT+A Sbjct: 1 MELRHLRYFIAVAEELHFGRAAERLGISQPPLSQQIQALEEEIGARLFERTNRRVELTDA 60 Query: 61 GELLLARARSLLANFEDAVADTRRVGRGQAGRLAIGFVGSAMFAG-LPDLIGSYRDACPD 119 G L L +R +LA + AV RR G+ G L IGF SA F +P I ++R A PD Sbjct: 61 GRLFLDESRQVLAQVDKAVLLARRAHLGELGELKIGFTSSAPFTSTIPSSIHAFRKAYPD 120 Query: 120 VELVLDEMLAAEIAEALRRRRIDVGFARPALVPEAGLAQRLILEEPYVAALPRAHPLA-- 177 V L L EM + ++ +AL + VG RP +P+A + + EP VA L HPLA Sbjct: 121 VHLDLQEMSSRQVLKALLEESLQVGVIRPLALPDA-VHWVELFREPLVAVLRADHPLAAG 179 Query: 178 ERDDIALAELSDDAFVLYPARPEPSVTGLIVAACQAAGFTPRLAQEVLHLQTAIGLIAAG 237 D +A+A L+++ FV +P + ++A + AGF+PR+AQE T IGL++AG Sbjct: 180 SEDGLAIAALAEEPFVFFPRSYGTGLYDQVIALTRQAGFSPRIAQEASEAMTIIGLVSAG 239 Query: 238 VGVSLVPEAAARAQTGRGVAYVRLAAPAVTAPLTIAWRDEDVSPAVQRLLDLVTR 292 +GVS++P + R + GV Y L+ P T + + R + SP +DLVTR Sbjct: 240 LGVSILPASFRRTRVD-GVVYRTLSDPEATTAVWLVRRQNEGSPLALSFIDLVTR 293 >BS_alsR [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis Length = 302 Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 165/289 (57%), Gaps = 2/289 (0%) Query: 1 MELRHLRYFVALGEELNFTRAAERLHIAQPPLSQQIRQLEDELGVTLLQRNSRPVRLTEA 60 MELRHL+YF+A+ EEL+F +AA RL++ QPPLSQQI+QLE+E+GVTLL+R R V LT A Sbjct: 1 MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKRTKRFVELTAA 60 Query: 61 GELLLARARSLLANFEDAVADTRRVGRGQAGRLAIGFVGSAMFAGLPDLIGSYRDACPDV 120 GE+ L R L + +R RG+ G L IGFVGSA + LP ++ YR P V Sbjct: 61 GEIFLNHCRMALMQIGQGIELAQRTARGEQGLLVIGFVGSATYEFLPPIVREYRKKFPSV 120 Query: 121 ELVLDEMLAAEIAEALRRRRIDVGFARPALVPEAGLAQRLILEEPYVAALPRAHPLAERD 180 ++ L E+ ++ E L + ID+G P L L P V ALP+ HPL ++ Sbjct: 121 KIELREISSSRQQEELLKGNIDIGILHPPL-QHTALHIETAQSSPCVLALPKQHPLTSKE 179 Query: 181 DIALAELSDDAFVLYPARPEPSVTGLIVAACQAAGFTPRLAQEVLHLQTAIGLIAAGVGV 240 I + +L D+ + P++ + C+ AGF P + QE Q IGL++AG+G+ Sbjct: 180 SITIEDLRDEPIITVAKEAWPTLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSAGIGM 239 Query: 241 SLVPEAAARAQTGRGVAYVRLAAPAVTAPLTIAWRDEDVSPAVQRLLDL 289 + VP ++A+ V Y ++ + A IA+R ++ +P ++ + + Sbjct: 240 TFVP-SSAKKLFNLDVTYRKMDQIQLNAEWVIAYRKDNHNPLIKHFIHI 287 >DRA0336 [K] COG0583 Transcriptional regulator Dra Deinococcus radiodurans Length = 316 Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 163/299 (54%), Gaps = 2/299 (0%) Query: 1 MELRHLRYFVALGEELNFTRAAERLHIAQPPLSQQIRQLEDELGVTLLQRNSRPVRLTEA 60 MELRHLRYF+A+ +E N TRAA RL I QPPLSQQIR+LE E+G L R R V LTEA Sbjct: 17 MELRHLRYFLAVADERNVTRAAARLGIQQPPLSQQIRELEREIGTPLFHRVPRGVELTEA 76 Query: 61 GELLLARARSLLANFEDAVADTRRVGRGQAGRLAIGFVGSA-MFAGLPDLIGSYRDACPD 119 G L +S+ A E A + RR GRG+ G L +GF G+A + + L+ YRD PD Sbjct: 77 GHTFLRLVQSIPAQVEGATHEARRAGRGETGELRVGFTGAASINPQVQGLLRRYRDLYPD 136 Query: 120 VELVLDEMLAAEIAEALRRRRIDVGFARPALVPEAGLAQRLILEEPYVAALPRAHPLAER 179 V L L E + + LR ++D ARP L L+ EP VA +PR HP A+ Sbjct: 137 VRLTLTEKNTVTLLDELRSHQLDAVLARPLPQHLGDLTLTLVAREPMVAVVPRGHPAAQT 196 Query: 180 DDIALAELSDDAFVLYPARPEPSVTGLIVAACQAAGFTPRLAQEVLHLQTAIGLIAAGVG 239 + L L D+ F+ P P + + AC+AAGF PRL Q + + + L+AAG+G Sbjct: 197 RPLPLERLRDETFITTPREFGPLIYDTVWQACRAAGFEPRLGQLAPQMLSIVSLVAAGLG 256 Query: 240 VSLVPEAAARAQTGRGVAYVRLAAPAVTAPLTIAWRDEDVSPAVQRLLDLVTRLGEIAP 298 VSLVP+A R G Y+ L P T LT+ R + + V LV + E P Sbjct: 257 VSLVPDAMRRLNL-EGCEYLELRPPVPTVDLTLLCRPHERAATVLNFTALVGDMQETGP 314 >AGl1663 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 309 Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/293 (45%), Positives = 175/293 (59%), Gaps = 12/293 (4%) Query: 1 MELRHLRYFVALGEELNFTRAAERLHIAQPPLSQQIRQLEDELGVTLLQRNSRPVRLTEA 60 ELRHLRYF L +E NF RAA RL IAQP LSQQI LED +G+ LL R R V+LT + Sbjct: 18 FELRHLRYFTTLVDERNFERAAARLGIAQPGLSQQIMALEDIVGMPLLDRTRRSVKLTTS 77 Query: 61 GELLLARARSLLANFEDAVADTRRVGRGQAGRLAIGFVGSAMFAG-LPDLIGSYRDACPD 119 G+LL AR +LAN E A+A RRVGRG+ GR++IG+V SA ++G L I S+R + PD Sbjct: 78 GQLLYEDARKILANAEAALASLRRVGRGETGRISIGYVASAAYSGLLIQSIASFRASHPD 137 Query: 120 VELVLDEMLA----AEIAEALRRRRIDVGFAR-PALVPEAGLAQRLILEEPYVAALPRAH 174 VEL L EM A+IA+ +D F R PA +PE G+A ++L EP +AALP H Sbjct: 138 VELQLIEMEMRLQLAKIADG----NLDFAFIRPPAPIPE-GVATHVVLREPLMAALPENH 192 Query: 175 PLAERDDIALAELSDDAFVLYPARPEPSVTGLIVAACQAAGFTPRLAQEVLHLQTAIGLI 234 PLA + L L+ + F+ P+ + AC AGF P ++ E T ++ Sbjct: 193 PLAYALQLDLKNLAAETFITPRQPPDVGFHYNTIEACNEAGFQPVISPEGRDYTTITSMV 252 Query: 235 AAGVGVSLVPEAAARAQTGRGVAYVRLAAPAVTAPLTIAWRDEDVSPAVQRLL 287 A G+GV+LVP + + GV YV LAA A T+ L IA R + SPAV+ + Sbjct: 253 AIGLGVALVPRSLDCLRLP-GVRYVPLAASATTSDLAIAHRKTEASPAVRAFI 304